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This repository contains a set of code to produce results from the cPCDH paper.

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cPCDH

For more information, please visit here

Prerequisite

  • EnvStats
  • fmsb
  • ggplot2
  • mclust
  • scales
  • stringr
  • ComplexHeatmap
  • survival
  • survminer
  • RColorBrewer

Session Info

R version 4.2.0 (2022-04-22)
Platform: x86_64-apple-darwin21.3.0 (64-bit)
Running under: macOS 13.1

Matrix products: default
LAPACK: /usr/local/Cellar/r/4.2.0/lib/R/lib/libRlapack.dylib

locale:
[1] en_CA.UTF-8/en_CA.UTF-8/en_CA.UTF-8/C/en_CA.UTF-8/en_CA.UTF-8

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] RColorBrewer_1.1-3    survminer_0.4.9       ggpubr_0.5.0          survival_3.4-0       
 [5] ComplexHeatmap_2.12.1 mclust_6.0.0          stringr_1.5.0         ggplot2_3.4.0        
 [9] fmsb_0.7.4            scales_1.2.1          EnvStats_2.7.0       

loaded via a namespace (and not attached):
 [1] lattice_0.20-45     circlize_0.4.15     tidyr_1.2.1         zoo_1.8-11         
 [5] png_0.1-8           assertthat_0.2.1    digest_0.6.30       foreach_1.5.2      
 [9] utf8_1.2.2          R6_2.5.1            backports_1.4.1     stats4_4.2.0       
[13] pillar_1.8.1        GlobalOptions_0.1.2 rlang_1.0.6         data.table_1.14.6  
[17] car_3.1-1           S4Vectors_0.34.0    GetoptLong_1.0.5    Matrix_1.5-3       
[21] splines_4.2.0       munsell_0.5.0       broom_1.0.1         xfun_0.35          
[25] compiler_4.2.0      pkgconfig_2.0.3     BiocGenerics_0.42.0 shape_1.4.6        
[29] tidyselect_1.2.0    km.ci_0.5-6         tibble_3.1.8        gridExtra_2.3      
[33] IRanges_2.30.1      codetools_0.2-18    matrixStats_0.63.0  fansi_1.0.3        
[37] crayon_1.5.2        dplyr_1.0.10        withr_2.5.0         xtable_1.8-4       
[41] jsonlite_1.8.4      gtable_0.3.1        lifecycle_1.0.3     DBI_1.1.3          
[45] KMsurv_0.1-5        magrittr_2.0.3      cli_3.4.1           stringi_1.7.8      
[49] carData_3.0-5       ggsignif_0.6.4      doParallel_1.0.17   survMisc_0.5.6     
[53] generics_0.1.3      vctrs_0.5.1         rjson_0.2.21        iterators_1.0.14   
[57] tools_4.2.0         glue_1.6.2          purrr_0.3.5         abind_1.4-5        
[61] parallel_4.2.0      clue_0.3-63         colorspace_2.0-3    cluster_2.1.4      
[65] rstatix_0.7.1       knitr_1.41         

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This repository contains a set of code to produce results from the cPCDH paper.

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