Update SeqJson Schema v1.1.0 #1302
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Publish | |
on: | |
push: | |
branches: | |
- develop | |
- dev-[0-9]+.[0-9]+.[0-9]+ | |
tags: | |
- v* | |
pull_request: | |
types: | |
# publish images for PRs labeled "publish" whenever changed/labeled | |
[opened, reopened, synchronize, labeled] | |
workflow_dispatch: | |
env: | |
REGISTRY: ghcr.io | |
OWNER: nasa-ammos | |
IS_RELEASE: ${{ startsWith(github.ref, 'refs/tags/v') }} | |
SHOULD_PUBLISH_IMAGES: ${{ (github.event_name != 'pull_request') || contains(github.event.pull_request.labels.*.name, 'publish') }} | |
SHOULD_PUBLISH_DEPLOYMENT: ${{ (github.event_name != 'pull_request') }} | |
jobs: | |
init: | |
runs-on: ubuntu-latest | |
permissions: | |
contents: read | |
outputs: | |
# set these as outputs to make available later, since `env` context isn't available in `jobs.if` | |
SHOULD_PUBLISH_IMAGES: ${{ env.SHOULD_PUBLISH_IMAGES }} | |
SHOULD_PUBLISH_DEPLOYMENT: ${{ env.SHOULD_PUBLISH_DEPLOYMENT }} | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: gradle/wrapper-validation-action@v2 | |
- uses: gradle/actions/setup-gradle@v3 | |
with: | |
generate-job-summary: false | |
- name: Gradle Version | |
run: ./gradlew --version | |
containers: | |
runs-on: ubuntu-latest | |
needs: init | |
if: needs.init.outputs.SHOULD_PUBLISH_IMAGES == 'true' | |
permissions: | |
contents: read | |
packages: write | |
strategy: | |
matrix: | |
components: | |
- image: aerie-merlin | |
context: merlin-server | |
file: merlin-server/Dockerfile | |
- image: aerie-merlin-worker | |
context: merlin-worker | |
file: merlin-worker/Dockerfile | |
- image: aerie-scheduler | |
context: scheduler-server | |
file: scheduler-server/Dockerfile | |
- image: aerie-scheduler-worker | |
context: scheduler-worker | |
file: scheduler-worker/Dockerfile | |
- image: aerie-sequencing | |
context: sequencing-server | |
file: sequencing-server/Dockerfile | |
- image: aerie-hasura | |
context: . | |
file: docker/Dockerfile.hasura | |
- image: aerie-postgres | |
context: . | |
file: docker/Dockerfile.postgres | |
name: ${{ matrix.components.image }} | |
steps: | |
- name: Log SHOULD_PUBLISH_IMAGES | |
run: echo ${{ needs.init.outputs.SHOULD_PUBLISH_IMAGES }} | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-java@v4 | |
with: | |
distribution: "temurin" | |
java-version: "21" | |
- name: Init Gradle cache | |
uses: gradle/actions/setup-gradle@v3 | |
with: | |
generate-job-summary: false | |
- name: Set up QEMU | |
uses: docker/setup-qemu-action@v3 | |
with: | |
platforms: linux/amd64,linux/arm64 | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v3 | |
- name: Login to ${{ env.REGISTRY }} | |
uses: docker/login-action@v3 | |
with: | |
registry: ${{ env.REGISTRY }} | |
username: ${{ github.actor }} | |
password: ${{ github.token }} | |
- name: Extract metadata (tags, labels) for ${{ matrix.components.image }} | |
id: metadata-step | |
uses: docker/metadata-action@v5 | |
with: | |
images: ${{ env.REGISTRY }}/${{ env.OWNER }}/${{ matrix.components.image }} | |
- name: Assemble ${{ matrix.components.context }} | |
env: | |
component: ${{ matrix.components.context }} | |
run: | | |
set -x | |
# aerie-hasura and aerie-postgres don't need compiled java | |
if [[ "$component" != "." ]]; then | |
./gradlew ":$component:assemble" --no-daemon --parallel | |
fi | |
- name: Build and push ${{ matrix.components.image }} | |
uses: docker/build-push-action@v5 | |
with: | |
context: ${{ matrix.components.context }} | |
file: ${{ matrix.components.file }} | |
platforms: linux/amd64,linux/arm64 | |
push: true | |
tags: ${{ steps.metadata-step.outputs.tags }} | |
labels: ${{ steps.metadata-step.outputs.labels }} | |
scan: | |
runs-on: ubuntu-latest | |
needs: containers | |
if: needs.init.outputs.SHOULD_PUBLISH_IMAGES == 'true' | |
strategy: | |
matrix: | |
image: | |
- aerie-merlin | |
- aerie-merlin-worker | |
- aerie-scheduler | |
- aerie-scheduler-worker | |
- aerie-sequencing | |
- aerie-hasura | |
- aerie-postgres | |
fail-fast: false | |
name: scan ${{ matrix.image }} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Scan ${{ matrix.image }} for vulnerabilities | |
uses: aquasecurity/[email protected] | |
with: | |
image-ref: ${{ env.REGISTRY }}/${{ env.OWNER }}/${{ matrix.image }}:develop | |
ignore-unfixed: true | |
exit-code: "1" | |
severity: "CRITICAL" | |
format: "template" | |
template: "@/contrib/html.tpl" | |
scanners: "vuln" | |
output: "${{ matrix.image }}-results.html" | |
trivyignores: .github/config/.trivyignore | |
- name: Upload ${{ matrix.image }} scan results | |
if: always() | |
uses: actions/upload-artifact@v4 | |
with: | |
name: Vuln Scan Results - ${{ matrix.image }} | |
path: "${{ matrix.image }}-results.html" | |
publish: | |
name: gradle publish | |
runs-on: ubuntu-latest | |
needs: init | |
if: needs.init.outputs.SHOULD_PUBLISH_DEPLOYMENT == 'true' | |
permissions: | |
contents: read | |
packages: write | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Gradle Cache | |
uses: gradle/actions/setup-gradle@v3 | |
with: | |
generate-job-summary: false | |
- name: Publish Package | |
run: ./gradlew publish -Pversion.isRelease=$IS_RELEASE --parallel | |
env: | |
GITHUB_TOKEN: ${{ github.token }} | |
- name: Create deployment archive | |
run: ./gradlew archiveDeployment | |
- name: Publish deployment | |
uses: actions/upload-artifact@v4 | |
with: | |
name: Deployment | |
path: deployment.tar |