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add test
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@Juke34
Juke34 committed Sep 9, 2024
1 parent ed9681b commit 8f35828
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8 changes: 8 additions & 0 deletions t/gff_syntax/in/45_test.gff
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BK063639.1 tpg tRNA 1637 1705 . + . ID=rna-BK063639.1:1637..1705;gbkey=tRNA;product=tRNA-Ile
BK063639.1 tpg exon 1637 1705 . + . ID=exon-BK063639.1:1637..1705-1;Parent=rna-BK063639.1:1637..1705;gbkey=tRNA;product=tRNA-Ile
BK063639.1 tpg CDS 1790 2779 . + 0 ID=cds-DBA43806.1;Dbxref=NCBI_GP:DBA43806.1;Name=DBA43806.1;gbkey=CDS;product=ND2;protein_id=DBA43806.1;transl_table=5
BK063639.1 tpg tRNA 2768 2840 . - . ID=rna-BK063639.1:2768..2840;gbkey=tRNA;product=tRNA-Cys
BK063639.1 tpg exon 2768 2840 . - . ID=exon-BK063639.1:2768..2840-1;Parent=rna-BK063639.1:2768..2840;gbkey=tRNA;product=tRNA-Cys
BK063639.1 tpg tRNA 3030 3098 . - . ID=rna-BK063639.1:3030..3098;gbkey=tRNA;product=tRNA-Trp
BK063639.1 tpg exon 3030 3098 . - . ID=exon-BK063639.1:3030..3098-1;Parent=rna-BK063639.1:3030..3098;gbkey=tRNA;product=tRNA-Trp
BK063639.1 tpg CDS 3114 4658 . + 0 ID=cds-DBA43807.1;Dbxref=NCBI_GP:DBA43807.1;Name=DBA43807.1;gbkey=CDS;product=COX1;protein_id=DBA43807.1;transl_table=5
6 changes: 6 additions & 0 deletions t/gff_syntax/in/46_test.gff
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BK063639.1 tpg CDS 1790 2779 . + 0 ID=cds-DBA43806.1;Dbxref=NCBI_GP:DBA43806.1;Name=DBA43806.1;gbkey=CDS;product=ND2;protein_id=DBA43806.1;transl_table=5
BK063639.1 tpg tRNA 2768 2840 . - . ID=rna-BK063639.1:2768..2840;gbkey=tRNA;product=tRNA-Cys
BK063639.1 tpg exon 2768 2840 . - . ID=exon-BK063639.1:2768..2840-1;Parent=rna-BK063639.1:2768..2840;gbkey=tRNA;product=tRNA-Cys
BK063639.1 tpg tRNA 3030 3098 . - . ID=rna-BK063639.1:3030..3098;gbkey=tRNA;product=tRNA-Trp
BK063639.1 tpg exon 3030 3098 . - . ID=exon-BK063639.1:3030..3098-1;Parent=rna-BK063639.1:3030..3098;gbkey=tRNA;product=tRNA-Trp
BK063639.1 tpg CDS 3114 4658 . + 0 ID=cds-DBA43807.1;Dbxref=NCBI_GP:DBA43807.1;Name=DBA43807.1;gbkey=CDS;product=COX1;protein_id=DBA43807.1;transl_table=5
18 changes: 18 additions & 0 deletions t/gff_syntax/out/45_correct_output.gff
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##gff-version 3
BK063639.1 AGAT gene 1637 1705 . + . ID=agat-gene-1;gbkey=tRNA;product=tRNA-Ile
BK063639.1 tpg tRNA 1637 1705 . + . ID=rna-BK063639.1:1637..1705;Parent=agat-gene-1;gbkey=tRNA;product=tRNA-Ile
BK063639.1 tpg exon 1637 1705 . + . ID=exon-BK063639.1:1637..1705-1;Parent=rna-BK063639.1:1637..1705;gbkey=tRNA;product=tRNA-Ile
BK063639.1 AGAT gene 1790 2779 . + . ID=agat-gene-4;Dbxref=NCBI_GP:DBA43806.1;Name=DBA43806.1;gbkey=CDS;product=ND2;protein_id=DBA43806.1;transl_table=5
BK063639.1 AGAT mRNA 1790 2779 . + . ID=agat-rna-1;Parent=agat-gene-4;Dbxref=NCBI_GP:DBA43806.1;Name=DBA43806.1;gbkey=CDS;product=ND2;protein_id=DBA43806.1;transl_table=5
BK063639.1 AGAT exon 1790 2779 . + . ID=agat-exon-1;Parent=agat-rna-1;Dbxref=NCBI_GP:DBA43806.1;Name=DBA43806.1;gbkey=CDS;product=ND2;protein_id=DBA43806.1;transl_table=5
BK063639.1 tpg CDS 1790 2779 . + 0 ID=cds-DBA43806.1;Parent=agat-rna-1;Dbxref=NCBI_GP:DBA43806.1;Name=DBA43806.1;gbkey=CDS;product=ND2;protein_id=DBA43806.1;transl_table=5
BK063639.1 AGAT gene 2768 2840 . - . ID=agat-gene-2;gbkey=tRNA;product=tRNA-Cys
BK063639.1 tpg tRNA 2768 2840 . - . ID=rna-BK063639.1:2768..2840;Parent=agat-gene-2;gbkey=tRNA;product=tRNA-Cys
BK063639.1 tpg exon 2768 2840 . - . ID=exon-BK063639.1:2768..2840-1;Parent=rna-BK063639.1:2768..2840;gbkey=tRNA;product=tRNA-Cys
BK063639.1 AGAT gene 3030 3098 . - . ID=agat-gene-3;gbkey=tRNA;product=tRNA-Trp
BK063639.1 tpg tRNA 3030 3098 . - . ID=rna-BK063639.1:3030..3098;Parent=agat-gene-3;gbkey=tRNA;product=tRNA-Trp
BK063639.1 tpg exon 3030 3098 . - . ID=exon-BK063639.1:3030..3098-1;Parent=rna-BK063639.1:3030..3098;gbkey=tRNA;product=tRNA-Trp
BK063639.1 AGAT gene 3114 4658 . + . ID=agat-gene-5;Dbxref=NCBI_GP:DBA43807.1;Name=DBA43807.1;gbkey=CDS;product=COX1;protein_id=DBA43807.1;transl_table=5
BK063639.1 AGAT mRNA 3114 4658 . + . ID=agat-rna-2;Parent=agat-gene-5;Dbxref=NCBI_GP:DBA43807.1;Name=DBA43807.1;gbkey=CDS;product=COX1;protein_id=DBA43807.1;transl_table=5
BK063639.1 AGAT exon 3114 4658 . + . ID=agat-exon-2;Parent=agat-rna-2;Dbxref=NCBI_GP:DBA43807.1;Name=DBA43807.1;gbkey=CDS;product=COX1;protein_id=DBA43807.1;transl_table=5
BK063639.1 tpg CDS 3114 4658 . + 0 ID=cds-DBA43807.1;Parent=agat-rna-2;Dbxref=NCBI_GP:DBA43807.1;Name=DBA43807.1;gbkey=CDS;product=COX1;protein_id=DBA43807.1;transl_table=5
15 changes: 15 additions & 0 deletions t/gff_syntax/out/46_correct_output.gff
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##gff-version 3
BK063639.1 AGAT gene 1790 2779 . + . ID=agat-gene-3;Dbxref=NCBI_GP:DBA43806.1;Name=DBA43806.1;gbkey=CDS;product=ND2;protein_id=DBA43806.1;transl_table=5
BK063639.1 AGAT mRNA 1790 2779 . + . ID=agat-rna-1;Parent=agat-gene-3;Dbxref=NCBI_GP:DBA43806.1;Name=DBA43806.1;gbkey=CDS;product=ND2;protein_id=DBA43806.1;transl_table=5
BK063639.1 AGAT exon 1790 2779 . + . ID=agat-exon-1;Parent=agat-rna-1;Dbxref=NCBI_GP:DBA43806.1;Name=DBA43806.1;gbkey=CDS;product=ND2;protein_id=DBA43806.1;transl_table=5
BK063639.1 tpg CDS 1790 2779 . + 0 ID=cds-DBA43806.1;Parent=agat-rna-1;Dbxref=NCBI_GP:DBA43806.1;Name=DBA43806.1;gbkey=CDS;product=ND2;protein_id=DBA43806.1;transl_table=5
BK063639.1 AGAT gene 2768 2840 . - . ID=agat-gene-1;gbkey=tRNA;product=tRNA-Cys
BK063639.1 tpg tRNA 2768 2840 . - . ID=rna-BK063639.1:2768..2840;Parent=agat-gene-1;gbkey=tRNA;product=tRNA-Cys
BK063639.1 tpg exon 2768 2840 . - . ID=exon-BK063639.1:2768..2840-1;Parent=rna-BK063639.1:2768..2840;gbkey=tRNA;product=tRNA-Cys
BK063639.1 AGAT gene 3030 3098 . - . ID=agat-gene-2;gbkey=tRNA;product=tRNA-Trp
BK063639.1 tpg tRNA 3030 3098 . - . ID=rna-BK063639.1:3030..3098;Parent=agat-gene-2;gbkey=tRNA;product=tRNA-Trp
BK063639.1 tpg exon 3030 3098 . - . ID=exon-BK063639.1:3030..3098-1;Parent=rna-BK063639.1:3030..3098;gbkey=tRNA;product=tRNA-Trp
BK063639.1 AGAT gene 3114 4658 . + . ID=agat-gene-4;Dbxref=NCBI_GP:DBA43807.1;Name=DBA43807.1;gbkey=CDS;product=COX1;protein_id=DBA43807.1;transl_table=5
BK063639.1 AGAT mRNA 3114 4658 . + . ID=agat-rna-2;Parent=agat-gene-4;Dbxref=NCBI_GP:DBA43807.1;Name=DBA43807.1;gbkey=CDS;product=COX1;protein_id=DBA43807.1;transl_table=5
BK063639.1 AGAT exon 3114 4658 . + . ID=agat-exon-2;Parent=agat-rna-2;Dbxref=NCBI_GP:DBA43807.1;Name=DBA43807.1;gbkey=CDS;product=COX1;protein_id=DBA43807.1;transl_table=5
BK063639.1 tpg CDS 3114 4658 . + 0 ID=cds-DBA43807.1;Parent=agat-rna-2;Dbxref=NCBI_GP:DBA43807.1;Name=DBA43807.1;gbkey=CDS;product=COX1;protein_id=DBA43807.1;transl_table=5

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