Merge pull request #171 from sylvinite/master

NGI_Pipeline now on regular branch; standalone scripts included
NationalGenomicsInfrastructure · Jan 13, 2017 · 523b0d5 · 523b0d5
2 parents 9cfffff + bd26883
commit 523b0d5
Show file tree

Hide file tree

Showing 4 changed files with 14 additions and 2 deletions.
diff --git a/host_vars/127.0.0.1/main.yml b/host_vars/127.0.0.1/main.yml
@@ -13,9 +13,9 @@ bash_env_script: sourceme_common.sh
 bash_env_upps_script: sourceme_upps.sh
 bash_env_sthlm_script: sourceme_sthlm.sh
 
-ngi_pipeline_repo: https://github.com/sylvinite/ngi_pipeline.git
+ngi_pipeline_repo: https://github.com/NationalGenomicsInfrastructure/ngi_pipeline.git
 ngi_pipeline_dest: "{{ sw_path }}/ngi_pipeline"
-ngi_pipeline_version: fcc4b733f7cf9c177bbcde9f18650c17d4c40155
+ngi_pipeline_version: dec6a32e30d34a648955010389204856cf277e44
 NGI_venv_name: "NGI"
 ngi_pipeline_venv: "{{ sw_path }}/anaconda/envs/{{ NGI_venv_name }}"
 

diff --git a/install.yml b/install.yml
@@ -36,6 +36,7 @@
     - { role: arteria-siswrap-ws, tags: arteria-siswrap }
     - { role: ngi-rnaseq, tags: ngi-rnaseq }
     - { role: nougat, tags: nougat }
+    - { role: standalone_scripts, tags: standalone_scripts }
 
   environment: "{{ anaconda_env }}"
 

diff --git a/roles/standalone_scripts/defaults/main.yml b/roles/standalone_scripts/defaults/main.yml
@@ -0,0 +1,4 @@
+---
+ss_repo: "https://github.com/SciLifeLab/standalone_scripts.git"
+ss_dest: "{{ sw_path }}/standalone_scripts"
+ss_version: 787dd25fed6692550630f3c1db404f47f5bacb16
diff --git a/roles/standalone_scripts/tasks/main.yml b/roles/standalone_scripts/tasks/main.yml
@@ -0,0 +1,7 @@
+#Kind of meager recipe, but will most likely grow from dependencies
+
+- name: Fetch standalone_scripts from GitHub
+  git: repo="{{ ss_repo }}"
+       dest="{{ ss_dest }}"
+       version="{{ ss_version }}"
+       force=yes