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Add source files to Nutil package
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@sharoncy
sharoncy committed Jun 26, 2024
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Binary file added Publish/source/CustomRegion/CustomRegion_Kim_Unified_Mouse.xlsx
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1,302 changes: 1,302 additions & 0 deletions Publish/source/labels/AllenMouseBrain_Atlas_CCF_2015.label
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1,342 changes: 1,342 additions & 0 deletions Publish/source/labels/AllenMouseBrain_Atlas_CCF_2017.label
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1,342 changes: 1,342 additions & 0 deletions Publish/source/labels/DeMBA.label
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1,142 changes: 1,142 additions & 0 deletions Publish/source/labels/KimMouse_2019.label
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95 changes: 95 additions & 0 deletions Publish/source/labels/WHS_Atlas_Rat_Brain_v2.label
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################################################
# ITK-SnAP Label Description File
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# IDX: Zero-based index
# -R-: Red color component (0..255)
# -G-: Green color component (0..255)
# -B-: Blue color component (0..255)
# -A-: Label transparency (0.00 .. 1.00)
# VIS: Label visibility (0 or 1)
# IDX: Label mesh visibility (0 or 1)
# LABEL: Label description
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0 0 0 0 0 0 0 "Clear Label"
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3 0 0 255 1 1 0 "subthalamic nucleus"
4 255 255 0 1 1 0 "molecular layer of the cerebellum"
5 0 255 255 1 1 0 "granule cell level of the cerebellum"
6 255 0 255 1 1 0 "alveus of the hippocampus"
7 52 255 13 1 1 0 "inferior cerebellar peduncle"
10 29 104 235 1 1 0 "cingulate cortex, area 2"
30 129 79 255 1 1 0 "striatum"
31 255 145 186 1 1 0 "globus pallidus"
32 26 231 255 1 1 0 "entopeduncular nucleus"
33 2 44 255 1 1 0 "ventricular system"
34 212 255 0 1 1 0 "medial lemniscus"
35 0 176 63 1 1 0 "facial nerve"
36 124 252 0 1 1 0 "anterior commissure, anterior part"
37 255 186 0 1 1 0 "anterior commissure, posterior part"
38 174 0 232 1 1 0 "ventral hippocampal commissure"
39 0 100 0 1 1 0 "thalamus"
40 255 8 0 1 1 0 "septal region"
41 48 218 0 1 1 0 "optic nerve"
42 38 126 255 1 1 0 "optic tract and optic chiasm"
43 218 170 62 1 1 0 "pineal gland"
44 0 165 21 1 1 0 "inner ear"
45 134 255 90 0.68 1 0 "spinal cord"
46 33 230 255 1 1 0 "commissure of the superior colliculus"
47 153 83 255 1 1 0 "brainstem"
48 226 120 161 1 1 0 "hypothalamic region"
49 238 47 44 1 1 0 "inferior colliculus"
50 86 0 221 1 1 0 "superficial gray layer of the superior colliculus"
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52 21 192 255 1 1 0 "fornix"
53 238 186 0 1 1 0 "mammillothalamic tract"
54 173 255 47 1 1 0 "commissural stria terminalis"
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67 255 110 0 1 1 0 "corpus callosum and associated subcortical white matter"
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73 255 79 206 1 1 0 "anterior commissure"
74 0 246 14 1 1 0 "inferior olive"
75 91 241 255 1 1 0 "spinal trigeminal nuclus"
76 250 128 114 1 1 0 "spinal trigeminal tract"
77 206 211 7 1 1 0 "frontal associiation cortex"
78 134 204 76 1 1 0 "middle cerebellar peduncle"
79 128 170 255 1 1 0 "transverse fibers of the pons"
80 69 235 202 1 1 0 "habenular commissure"
81 222 7 237 1 1 0 "nucleus of the stria medullaris"
82 225 240 13 1 1 0 "basal forebrain region"
83 250 170 64 1 1 0 "supraoptic decussation"
84 65 150 255 1 1 0 "medial lemniscus decussation"
85 114 9 212 1 1 0 "pyramidal decussation"
92 3 193 45 1 1 0 "neocortex"
93 0 8 182 1 1 0 "bed nucleus of the stria terminalis"
94 255 87 30 1 1 0 "pretectal region"
95 165 131 107 1 1 1 "cornu ammonis 3"
96 91 45 10 1 1 1 "dentate gyrus"
97 255 255 0 1 1 1 "cornu ammonis 2"
98 217 104 13 1 1 1 "cornu ammonis 1"
99 255 82 82 1 1 1 "fasciola cinereum"
100 255 192 0 1 1 1 "subiculum"
108 40 112 130 1 1 1 "postrhinal cortex"
109 80 123 175 1 1 1 "presubiculum"
110 23 54 96 1 1 1 "parasubiculum"
112 205 51 255 1 1 1 "perirhinal area 35"
113 112 48 160 1 1 1 "perirhinal area 36"
114 12 92 8 1 1 1 "entorhinal cortex"
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133 changes: 133 additions & 0 deletions Publish/source/labels/WHS_Atlas_Rat_Brain_v3.label
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################################################
# ITK-SnAP Label Description File
# File format:
# IDX -R- -G- -B- -A-- VIS MSH LABEL
# Fields:
# IDX: Zero-based index
# -R-: Red color component (0..255)
# -G-: Green color component (0..255)
# -B-: Blue color component (0..255)
# -A-: Label transparency (0.00 .. 1.00)
# VIS: Label visibility (0 or 1)
# IDX: Label mesh visibility (0 or 1)
# LABEL: Label description
################################################
0 0 0 0 0 0 0 "Clear Label"
1 255 52 39 1 1 0 "descending corticofugal pathways"
2 255 186 0 1 1 0 "substantia nigra"
3 0 0 255 1 1 0 "subthalamic nucleus"
4 255 255 0 1 1 0 "molecular layer of the cerebellum"
5 0 255 255 1 1 0 "granule cell level of the cerebellum"
6 255 0 255 1 1 0 "alveus of the hippocampus"
7 52 255 13 1 1 0 "inferior cerebellar peduncle"
10 29 104 235 1 1 0 "cingulate cortex, area 2"
30 129 79 255 1 1 0 "striatum"
31 255 145 186 1 1 0 "globus pallidus"
32 26 231 255 1 1 0 "entopeduncular nucleus"
33 2 44 255 1 1 0 "ventricular system"
34 212 255 0 1 1 0 "medial lemniscus"
35 255 25 240 1 1 0 "facial nerve"
36 124 252 0 1 1 0 "anterior commissure, anterior part"
37 255 186 0 1 1 0 "anterior commissure, posterior part"
38 174 0 232 1 1 0 "ventral hippocampal commissure"
39 0 100 0 1 1 0 "thalamus"
40 255 8 0 1 1 0 "septal region"
41 48 218 0 1 1 0 "optic nerve"
42 38 126 255 1 1 0 "optic tract and optic chiasm"
43 218 170 62 1 1 0 "pineal gland"
45 134 255 90 1 1 0 "spinal cord"
46 33 230 255 1 1 0 "commissure of the superior colliculus"
47 153 83 255 1 1 0 "brainstem"
48 226 120 161 1 1 0 "hypothalamic region"
50 86 0 221 1 1 0 "superficial gray layer of the superior colliculus"
51 7 255 89 1 1 0 "periaqueductal gray"
52 21 192 255 1 1 0 "fornix"
53 238 186 0 1 1 0 "mammillothalamic tract"
54 173 255 47 1 1 0 "commissural stria terminalis"
55 225 151 15 1 1 0 "deeper layers of the superior colliculus"
56 235 87 255 1 1 0 "periventricular gray"
57 250 244 247 1 1 0 "genu of the facial nerve"
58 0 215 11 1 1 0 "pontine nuclei"
59 0 255 29 1 1 0 "fimbria of the hippocampus"
60 244 67 69 1 1 0 "fasciculus retroflexus"
61 0 255 0 1 1 0 "stria medullaris of the thalamus"
62 238 117 51 1 1 0 "stria terminalis"
63 255 0 218 1 1 0 "posterior commissure"
64 15 109 230 1 1 0 "glomerular layer of the accessory olfactory bulb"
65 255 227 0 1 1 0 "glomerular layer of the olfactory bulb"
66 255 135 0 1 1 0 "olfactory bulb"
67 255 110 0 1 1 0 "corpus callosum and associated subcortical white matter"
68 188 32 173 1 1 0 "brachium of the superior colliculus"
69 255 42 39 1 1 1 "inferior colliculus, commissure"
70 39 244 253 1 1 0 "central canal"
71 63 192 255 1 1 0 "interpeduncular nucleus"
72 179 28 53 1 1 0 "ascending fibers of the facial nerve"
73 255 79 206 1 1 0 "anterior commissure"
74 0 246 14 1 1 0 "inferior olive"
75 91 241 255 1 1 0 "spinal trigeminal nucleus"
76 250 128 114 1 1 0 "spinal trigeminal tract"
77 206 211 7 1 1 0 "frontal association cortex"
78 134 204 76 1 1 0 "middle cerebellar peduncle"
79 128 170 255 1 1 0 "transverse fibers of the pons"
80 69 235 202 1 1 0 "habenular commissure"
81 222 7 237 1 1 0 "nucleus of the stria medullaris"
82 225 240 13 1 1 0 "basal forebrain region"
83 250 170 64 1 1 0 "supraoptic decussation"
84 65 150 255 1 1 0 "medial lemniscus decussation"
85 114 9 212 1 1 0 "pyramidal decussation"
92 3 193 45 1 1 0 "neocortex"
93 0 8 182 1 1 0 "bed nucleus of the stria terminalis"
94 255 87 30 1 1 0 "pretectal region"
95 165 131 107 1 1 0 "cornu ammonis 3"
96 91 45 10 1 1 0 "dentate gyrus"
97 255 255 0 1 1 0 "cornu ammonis 2"
98 217 104 13 1 1 0 "cornu ammonis 1"
99 255 0 0 1 1 0 "fasciola cinereum"
100 255 192 0 1 1 0 "subiculum"
108 40 112 130 1 1 0 "postrhinal cortex"
109 80 123 175 1 1 0 "presubiculum"
110 23 54 96 1 1 0 "parasubiculum"
112 205 51 255 1 1 0 "perirhinal area 35"
113 112 48 160 1 1 0 "perirhinal area 36"
114 122 187 51 1 1 0 "entorhinal cortex"
115 90 111 47 1 1 0 "lateral entorhinal cortex"
119 0 144 55 1 1 1 "vestibular apparatus"
120 0 255 29 1 1 1 "cochlea"
121 253 148 0 1 1 1 "cochlear nerve"
122 253 50 0 1 1 1 "vestibular nerve"
123 0 12 255 1 1 1 "ventral cochlear nucleus, granule cell layer"
125 52 29 144 1 1 0 "4th ventricle"
126 92 156 211 1 1 1 "dorsal cochlear nucleus, molecular layer"
127 0 80 156 1 1 1 "dorsal cochlear nucleus, fusiform and granule layer"
128 197 238 255 1 1 1 "dorsal cochlear nucleus, deep core"
129 255 217 0 1 1 1 "acoustic striae"
130 213 255 0 1 1 1 "trapezoid body"
131 0 255 81 1 1 1 "nucleus of the trapezoid body"
132 0 238 255 1 1 1 "superior paraolivary nucleus"
133 219 239 61 1 1 1 "medial superior olive"
134 35 76 190 1 1 1 "lateral superior olive"
135 1 153 21 1 1 1 "superior periolivary region"
136 0 174 255 1 1 1 "ventral periolivary nuclei"
137 255 0 115 1 1 1 "lateral lemniscus, ventral nucleus"
138 171 16 91 1 1 1 "lateral lemniscus, intermediate nucleus"
139 108 18 91 1 1 1 "lateral lemniscus, dorsal nucleus"
140 255 29 0 1 1 1 "lateral lemniscus, commissure"
141 255 166 0 1 1 1 "lateral lemniscus"
142 206 255 142 1 1 1 "inferior colliculus, dorsal cortex"
143 0 238 255 1 1 1 "inferior colliculus, central nucleus"
145 48 136 203 1 1 1 "inferior colliculus, external cortex"
146 176 58 72 1 1 1 "inferior colliculus, brachium"
147 10 244 217 1 1 1 "medial geniculate body, medial division"
148 239 163 0 1 1 1 "medial geniculate body, dorsal division"
149 131 58 31 1 1 1 "medial geniculate body, ventral division"
150 255 47 242 1 1 1 "medial geniculate body, marginal zone"
151 255 215 0 1 1 1 "primary auditory cortex"
152 240 255 255 1 1 1 "secondary auditory cortex, dorsal area"
153 216 191 216 1 1 1 "secondary auditory cortex, ventral area"
157 244 156 255 1 1 1 "auditory radiation"
158 34 152 255 1 1 1 "ventral cochlear nucleus, anterior part"
159 0 230 207 1 1 1 "ventral cochlear nucleus, posterior part"
160 0 255 106 1 1 1 "ventral cochlear nucleus, cap area"
162 185 255 233 1 1 1 "spiral ganglion"
163 99 205 0 1 1 1 "nucleus sagulum"
164 110 0 255 1 1 1 "reticular thalamic nucleus, auditory segment"
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