Regenerated for latest version of NeuroML 2 schema

Added ion_channel to the NameTable to ensure correct naming of attribute of ChannelDensity: ChannelDensity(cond_density='50 mS_per_cm2', ion_channel='NaF', erev='55.0 mV', ion='na') This has the unfortunate consequence that the array in doc is singular: doc.ion_channel.append(chan) See #46
NeuralEnsemble · Feb 21, 2014 · 2e10b9a · 2e10b9a
1 parent 4006956
commit 2e10b9a
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Showing 5 changed files with 167 additions and 164 deletions.
diff --git a/neuroml/examples/ion_channel_generation.py b/neuroml/examples/ion_channel_generation.py
@@ -40,7 +40,7 @@
 chan.gates.append(h_gate)
 
 doc = neuroml.NeuroMLDocument()
-doc.ion_channels.append(chan)
+doc.ion_channel.append(chan)
 
 doc.id = "ChannelMLDemo"
 

diff --git a/neuroml/nml/changed_names.csv b/neuroml/nml/changed_names.csv
@@ -95,7 +95,7 @@ iafTauCell,iaf_tau_cells
 zSpacing,z_spacing
 pulseGenerator,pulse_generators
 population,populations
-ionChannel,ion_channels
+ionChannel,ion_channel
 allowedSpaces,allowed_spaces
 shellThickness,shell_thickness
 experimentalTemp,experimental_temp

diff --git a/neuroml/nml/generateds_config.py b/neuroml/nml/generateds_config.py
@@ -93,6 +93,9 @@ def _node_to_python(node):
 NameTable['gateHHrates']  = 'gate_hh_rates'
 NameTable['gateHHtauInf'] = 'gate_hh_tau_infs'
 
+NameTable['ionChannel'] = 'ion_channel'
+
+
 
 NameTable['basePyNNCell'] = 'basePyNNCell'
 NameTable['basePyNNIaFCell'] = 'basePyNNIaFCell'

diff --git a/neuroml/nml/name_table.csv b/neuroml/nml/name_table.csv
@@ -171,7 +171,7 @@ population,populations
 reset,reset
 b,b
 i_offset,i_offset
-ionChannel,ion_channels
+ionChannel,ion_channel
 allowedSpaces,allowed_spaces
 shellThickness,shell_thickness
 j,j