Bokeh app and version/dependency updates

[lasseke]

• Updated the bokeh app to enable making and running cases from a settings file via a simple interactive browser interface
• Changed platform package version to 0.1.0 (will be used to name case/input/run folders, too)
• Updated previously discovered dependency issues, which might overlap with @ka7eh 's recent PR Docker updates #76

[ka7eh]

I tested the code in docker and faced 2 issues, which are not relevant outside of docker, but it's good to mention now.

First, USER env var is not set, which is required by create_newcase (I'm not sure why. This should be available by default). This can be fixed by importing os and adding the following line after the imports: os.environ['USER'] = subprocess.run(['whoami'], stdout=PIPE).stdout.decode('utf-8').strip().

The second issue is about data folder permissions inside docker, though we can ignore this for now. I think it's easier to merge this first and then fix this issue so we can test everything together with the latest docker changes.

[lasseke]

Thanks, Kaveh! I'll merge it for now then so that everyone can easily test the new adaptations. There is also one UX issue with executing multiple call-backs in the bokeh up simultaneously, I will show what I mean during our meeting and open a GH issue later.