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11 Open 16 Closed
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Issues list

Any advice on how to create a haplotype-resolved assembly form the phase FastQ reads
#27 opened Jan 23, 2024 by mdondrup
4
nphase takes a long time at GATK step
#26 opened Jan 12, 2024 by mdondrup
4
Extract phased variants or reads
#23 opened Oct 28, 2022 by Adamtaranto
5
Duration and Heterozygosity
#22 opened Sep 22, 2022 by rmormando
28
nPhase needs a guide/tutorial for working on large/very heterozygous genomes
#13 opened Oct 13, 2021 by OmarOakheart
2
nPhase on one chromosome
#12 opened Oct 13, 2021 by elsasverris
3
nPhase is too slow/memory intensive
#11 opened Oct 2, 2021 by OmarOakheart
1
nPhase has no option to set max heterozygosity level
#10 opened Oct 2, 2021 by OmarOakheart
ZeroDivisionError in assignLongReadToSNPs when samLines < 100
#9 opened Sep 29, 2021 by a-lud
1
Running nphase partial with a .bam file or a .sam file that isn't sorted or has a header
#8 opened Jun 2, 2021 by OmarOakheart
Running nPhase partial with mapped short reads
#6 opened Jan 13, 2021 by jdenkena
4
ProTip! Exclude everything labeled bug with -label:bug.