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adding a lot of changes and new files to compensate for the change in…
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Shorrock committed May 6, 2024
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242,336 changes: 242,336 additions & 0 deletions alv/alv_2020_USAreaDeprivationIndex_V1.csv

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84,123 changes: 84,123 additions & 0 deletions alv/alv_2020_USSocialVulnerabilityIndex_V1.csv

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2 changes: 2 additions & 0 deletions anthro/anthro_2022_11_BMI_V1.csv
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TABLE_NAME,FIELD_NAME,RDBMS_DATA_TYPE,SAS_DATA_TYPE,DATA_FORMAT,REPLICATED_FIELD,UNIT_OF_MEASURE,VALUESET,FIELD_DEFINITION
VITAL,ORIGINAL_BMI,RDBMS Number(x),SAS Numeric(length 8),"RDBMS number supports 15 total digits, 8 after decimal; SAS numeric length 8",NO,,NO,"BMI if calculated in the source system. Decimal precision is permissible (new guidance added in v3.1). Important: Please do not calculate BMI during CDM implementation. This field should only reflect originating source system calculations, if height and weight are not stored in the source. Number precision and scale updated in v3.1."
2 changes: 2 additions & 0 deletions anthro/anthro_2022_11_Height_V1.csv
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TABLE_NAME,FIELD_NAME,RDBMS_DATA_TYPE,SAS_DATA_TYPE,DATA_FORMAT,REPLICATED_FIELD,UNIT_OF_MEASURE,VALUESET,FIELD_DEFINITION
VITAL,HT,RDBMS Number(x),SAS Numeric(length 8),"RDBMS number supports 15 total digits, 8 after decimal; SAS numeric length 8",NO,,NO,"Height (in inches) measured by standing. Only populated if measure was taken on this date. If missing, this value should be null. Decimal precision is permissible. Number precision and scale updated in v3.1."
2 changes: 2 additions & 0 deletions anthro/anthro_2022_11_Weight_V1.csv
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TABLE_NAME,FIELD_NAME,RDBMS_DATA_TYPE,SAS_DATA_TYPE,DATA_FORMAT,REPLICATED_FIELD,UNIT_OF_MEASURE,VALUESET,FIELD_DEFINITION
VITAL,WT,RDBMS Number(x),SAS Numeric(length 8),"RDBMS number supports 15 total digits, 8 after decimal; SAS numeric length 8",NO,,NO,"Weight (in pounds). Only populated if measure was taken on this date. If missing, this value should be null. Decimal precision is permissible. Number precision and scale updated in v3.1."
1 change: 1 addition & 0 deletions conditions/dx_2018_04_Anxiety_V1.csv
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concept_id,concept_name,concept_code4263770,Secondary dysthymia late onset,361700094150047,Secondary dysthymia early onset,31090084243308,Primary dysthymia early onset,384510034057218,Late onset dysthymia,196940024096229,Early onset dysthymia,25060034242095,Anxiety disorder of adolescence,378680084099956,Acute panic state due to acute stress reaction,192037000381537,Organic anxiety disorder,174960034136518,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND mild panic attacks",31781004432600,Stress reaction causing mixed disturbance of emotion and conduct,1920440094147466,Panic disorder with agoraphobia,356070044338031,Mixed anxiety and depressive disorder,231504006436074,Panic disorder,3716310054137120,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND moderate panic attacks",323880054199892,Anxiety disorder due to a general medical condition,529100064175779,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND moderate panic attacks",495640064135202,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND panic attacks in partial remission",31580074242704,Avoidant disorder of childhood OR adolescence,378720074008568,"Panic disorder with agoraphobia, agoraphobic avoidance in full remission AND panic attacks in partial remission",1114910044028677,Overanxious disorder of childhood,134380014143602,"Panic disorder with agoraphobia, agoraphobic avoidance in full remission AND severe panic attacks",34116005433178,Anxiety disorder of childhood OR adolescence,1090064146608,"Panic disorder with agoraphobia, severe agoraphobic avoidance AND moderate panic attacks",300590084182119,Panic disorder without agoraphobia with severe panic attacks,431500094177015,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND panic attacks in partial remission",50983008434628,Separation anxiety,1269430084002897,"Panic disorder with agoraphobia, agoraphobic avoidance in full remission AND panic attacks in full remission",119410064203449,Anxiety disorder of childhood,53467004434613,Generalized anxiety disorder,21897009440374,Obsessive-compulsive disorder,1917360044171336,"Panic disorder with agoraphobia, moderate agoraphobic avoidance AND mild panic attacks",49320024006459,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND severe panic attacks",1114900034243153,"Panic disorder with agoraphobia, severe agoraphobic avoidance AND panic attacks in full remission",38328002440690,Social phobia,255010024100100,Childhood phobic anxiety disorder,1926110044054913,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND severe panic attacks",197660044329036,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND panic attacks in full remission",22230001442077,Anxiety disorder,1974800064039212,Separation anxiety disorder of childhood,11806006439786,Agoraphobia with panic attacks,1917220094085666,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND panic attacks in full remission",247810094109930,"Panic disorder with agoraphobia, severe agoraphobic avoidance AND mild panic attacks",18160034182119,Panic disorder without agoraphobia with severe panic attacks,431500094171336,"Panic disorder with agoraphobia, moderate agoraphobic avoidance AND mild panic attacks",49320024002897,"Panic disorder with agoraphobia, agoraphobic avoidance in full remission AND panic attacks in full remission",119410064006459,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND severe panic attacks",1114900034135202,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND panic attacks in partial remission",31580074054913,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND severe panic attacks",197660044243153,"Panic disorder with agoraphobia, severe agoraphobic avoidance AND panic attacks in full remission",383280024008568,"Panic disorder with agoraphobia, agoraphobic avoidance in full remission AND panic attacks in partial remission",1114910044175779,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND moderate panic attacks",495640064143602,"Panic disorder with agoraphobia, agoraphobic avoidance in full remission AND severe panic attacks",341160054136518,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND mild panic attacks",317810044146608,"Panic disorder with agoraphobia, severe agoraphobic avoidance AND moderate panic attacks",300590084329036,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND panic attacks in full remission",222300014177015,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND panic attacks in partial remission",509830084137120,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND moderate panic attacks",323880054147466,Panic disorder with agoraphobia,356070044085666,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND panic attacks in full remission",247810094109930,"Panic disorder with agoraphobia, severe agoraphobic avoidance AND mild panic attacks",18160034146608,"Panic disorder with agoraphobia, severe agoraphobic avoidance AND moderate panic attacks",300590084243153,"Panic disorder with agoraphobia, severe agoraphobic avoidance AND panic attacks in full remission",383280024147466,Panic disorder with agoraphobia,356070044329036,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND panic attacks in full remission",222300014175779,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND moderate panic attacks",495640064135202,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND panic attacks in partial remission",3158007440690,Social phobia,255010024177015,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND panic attacks in partial remission",509830084002897,"Panic disorder with agoraphobia, agoraphobic avoidance in full remission AND panic attacks in full remission",119410064136518,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND mild panic attacks",317810044006459,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND severe panic attacks",1114900034054913,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND severe panic attacks",197660044171336,"Panic disorder with agoraphobia, moderate agoraphobic avoidance AND mild panic attacks",49320024137120,"Panic disorder with agoraphobia, agoraphobic avoidance in partial remission AND moderate panic attacks",323880054143602,"Panic disorder with agoraphobia, agoraphobic avoidance in full remission AND severe panic attacks",341160054008568,"Panic disorder with agoraphobia, agoraphobic avoidance in full remission AND panic attacks in partial remission",111491004439786,Agoraphobia with panic attacks,1917220094085666,"Panic disorder with agoraphobia, mild agoraphobic avoidance AND panic attacks in full remission",247810094109930,"Panic disorder with agoraphobia, severe agoraphobic avoidance AND mild panic attacks",1816003440374,Obsessive-compulsive disorder,191736004440690,Social phobia,25501002434613,Generalized anxiety disorder,21897009
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1 change: 1 addition & 0 deletions conditions/dx_2018_04_DevelopmentalDelay_V1.csv
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concept_id,concept_name,concept_code4075828,Global developmental delay,22495800143020439,Borderline cognitive developmental delay,1.8541E+134137543,Cognitive developmental delay,4258050044143677,Developmental delay in feeding,426881004436077,Developmental delay,248290002440382,Learning difficulties,1611290014039748,Expressive language delay,2297340084047111,Motor speech disorder,2296830004146723,Developmental aphasia,2686730094310050,O/E - speech delay,3910990004047124,Expressive language disorder,2297330024047123,Speech delay,2297210074041689,Developmental articulatory dyspraxia,229701006435232,Disorder of speech and language development,268672004441274,Developmental expressive language disorder,2687340004044420,Developmental motor speech disorder,229700007436373,Developmental speech disorder,1145003433759,Developmental reading disorder,528240094047123,Speech delay,22972100743020439,Borderline cognitive developmental delay,1.8541E+134039752,Restricted expressive language development,2297420094189466,Autistic spectrum disorder with isolated skills,373618009439702,Residual infantile autism,191690004437261,Hyperkinesis with developmental delay,1921310014338037,Atypical autism,231536004434902,Autistic disorder of childhood onset,43614003435232,Disorder of speech and language development,2686720044041822,Developmental language impairment,229729009443361,Developmental language disorder,2800320024180651,Developmental hereditary disorder,3630700084039750,Delayed pre-verbal development,229740001438733,Profound mental retardation,312160034137543,Cognitive developmental delay,42580500440481800,Mixed developmental disorder,4420590014027604,Specific developmental disorder,107200044149904,"Attention deficit hyperactivity disorder, combined type",31177006439703,Active infantile autism,1916890084328436,Gross motor development delay,4300990074047117,Developmental verbal dyspraxia,229703009441274,Developmental expressive language disorder,268734000432898,Severe mental retardation,40700009433759,Developmental reading disorder,528240094148091,Developmental disorder of motor function,26867400343020503,Pervasive developmental disorder of residual state,3.9951E+134149353,"Attention deficit hyperactivity disorder, predominantly inattentive type",352530014039755,Developmental semantic impairment,2297450064262921,Hyperkinetic syndrome with developmental delay,46745001441277,Mixed receptive-expressive language disorder,257660074049391,Undifferentiated attention deficit disorder,231480094146033,Clumsiness - motor delay,307653008440086,Child attention deficit disorder,1921270074254211,Infantile autism,4088570074043545,Developmental mental disorder,129104009439780,Autistic disorder,4088560034041825,Restricted language development,2297410024102986,Disorder of psychological development,1925620094047120,Disorders of attention and motor control,2297120064149820,Speech and language dyspraxias,2789200074105188,Mixed disorder of psychological development,192147004443443,Receptive language disorder,3675150044039748,Expressive language delay,229734008436077,Developmental delay,2482900024047124,Expressive language disorder,22973300244788982,Mixed receptive-expressive language delay,1.96901E+144092225,Developmental receptive language disorder,1879210024146723,Developmental aphasia,2686730094044557,Mixed acquired dyspraxia,2297050024047111,Motor speech disorder,2296830004041689,Developmental articulatory dyspraxia,2297010064053178,Asperger's disorder,235600014041824,Receptive language delay,22973600540482738,Active but odd autism,4423140004314386,Hypothyroid dwarfism,216693007436373,Developmental speech disorder,1145003438409,Attention deficit hyperactivity disorder,4065060084143677,Developmental delay in feeding,4268810044039753,Restricted receptive language development,2297430044044420,Developmental motor speech disorder,2297000074310050,O/E - speech delay,39109900040482251,Retardation of physical development,442168001439776,Autism spectrum disorder,359190054075828,Global developmental delay,22495800144801788,[X]Severe learning disability,5.08171E+14440388,Developmental coordination disorder,27544004435244,Developmental disorder,52940024041687,Oral-verbal dyspraxia,2296970084047124,Expressive language disorder,2297330024041689,Developmental articulatory dyspraxia,229701006441274,Developmental expressive language disorder,2687340004039748,Expressive language delay,2297340084146723,Developmental aphasia,268673009435232,Disorder of speech and language development,26867200444788982,Mixed receptive-expressive language delay,1.96901E+14441277,Mixed receptive-expressive language disorder,25766007440388,Developmental coordination disorder,275440044047124,Expressive language disorder,229733002
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1 change: 1 addition & 0 deletions conditions/dx_2018_04_MajorDepressiveDisorder_V1.csv
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concept_id,concept_name,concept_code436945,"Single major depressive episode, mild",191601008437837,"Single major depressive episode, moderate",191602001439259,"Single major depressive episode, severe, with psychosis",191604000433750,"Single major depressive episode, in full remission",191606003432284,Single major depressive episode,268620009440075,"Recurrent major depressive episodes, in full remission",191615005438998,"Recurrent major depressive episodes, mild",191610000436945,"Single major depressive episode, mild",1916010084181807,"Major depressive disorder, single episode with atypical features",429250024067409,"Severe major depression, single episode, with psychotic features, mood-incongruent",202500074031328,"Chronic major depressive disorder, single episode",141830034093584,"Major depressive disorder, single episode with postpartum onset",259220004025677,Single episode of major depression in full remission,1952700942872411,"Severe major depression, single episode",2.51E+114049623,"Moderate major depression, single episode",156390004282096,"Major depression, single episode",369230094092238,Depression worse in morning,24780100040546087,Depressed mood,3669790044084699,Anxiety about body function or health,247808006437837,"Single major depressive episode, moderate",1916020014067409,"Severe major depression, single episode, with psychotic features, mood-incongruent",20250007438406,"Severe major depression, single episode, with psychotic features",430852001438998,"Recurrent major depressive episodes, mild",191610000432883,"Recurrent major depressive episodes, moderate",191611001434911,"Recurrent major depressive episodes, severe, with psychosis",191613003440075,"Recurrent major depressive episodes, in full remission",191615005432285,Recurrent major depressive episodes,2686210084181807,"Major depressive disorder, single episode with atypical features",42925002438727,Atypical depressive disorder,191659001432883,"Recurrent major depressive episodes, moderate",191611001433750,"Single major depressive episode, in full remission",191606003434911,"Recurrent major depressive episodes, severe, with psychosis",1916130034038252,O/E - depressed,1627220014263748,Recurrent major depression in full remission,46244001438998,"Recurrent major depressive episodes, mild",19161000042872722,Severe major depression,4507140004154309,Severe recurrent major depression with psychotic features,284750094269143,Mild mood disorder,366220024149320,Mild depression,3104950034154391,"Major depression, melancholic type",3207510094103574,Chronic depression,1920800094025677,Single episode of major depression in full remission,195270094168858,Endogenous depression - recurrent,2749480024114950,Endogenous depression,3007060034149321,Severe depression,3104970064144233,"Severe major depression with psychotic features, mood-congruent",337360054049623,"Moderate major depression, single episode",1563900044782720,Severe seasonal affective disorder,1.33121E+144096229,Early onset dysthymia,2506003432285,Recurrent major depressive episodes,2686210084077577,Moderate recurrent major depression,188180094226155,Recurrent brief depressive disorder,405680014175329,Organic mood disorder of depressed type,4259400144794371,[X]Severe depressive episode with psychotic symptoms,3.97711E+14436945,"Single major depressive episode, mild",19160100845757196,Major depressive disorder in mother complicating pregnancy,1.08112E+164181807,"Major depressive disorder, single episode with atypical features",429250024093584,"Major depressive disorder, single episode with postpartum onset",25922000440075,"Recurrent major depressive episodes, in full remission",1916150054263770,Secondary dysthymia late onset,3617000944795104,[X] Single episode major depression without psychotic symptoms,4.01211E+144092239,Seasonal affective disorder,247803002438406,"Severe major depression, single episode, with psychotic features",430852001432883,"Recurrent major depressive episodes, moderate",1916110014304140,Recurrent major depressive disorder with atypical features,386940044243308,Primary dysthymia early onset,38451003439259,"Single major depressive episode, severe, with psychosis",1916040004141454,Recurrent major depression in partial remission,33135002435220,Severe recurrent major depression without psychotic features,3647400844797421,[X]Mild depressive episode,4.30421E+1442872411,"Severe major depression, single episode",2.51E+11432284,Single major depressive episode,2686200094282096,"Major depression, single episode",36923009433750,"Single major depressive episode, in full remission",1916060034141292,"Severe recurrent major depression with psychotic features, mood-congruent",3307800944794370,[X]Severe depressive episode without psychotic symptoms,3.97701E+144094358,Chronic recurrent major depressive disorder,26180024228802,Mild recurrent major depression,403790074333687,Depressive conduct disorder,2315420004150047,Secondary dysthymia early onset,31090084151170,Moderate depression,3104960024220023,Recurrent major depressive disorder with catatonic features,398090094057218,Late onset dysthymia,196940024205471,Recurrent major depressive disorder with melancholic features,3197680004152280,Major depressive disorder,3701430004244690,Mood disorder in full remission,38547003437837,"Single major depressive episode, moderate",1916020014031328,"Chronic major depressive disorder, single episode",14183003434911,"Recurrent major depressive episodes, severe, with psychosis",19161300344800606,[X]Moderate depressive episode,4.65441E+144148630,Major depression in partial remission,30605009440383,Depressive disorder,354890074098302,Recurrent depression,1916160064174987,Minor depressive disorder,485890094176002,Major depression in remission,428100034132144,Severe mood disorder with psychotic features,265160094067409,"Severe major depression, single episode, with psychotic features, mood-incongruent",202500074034842,"Severe recurrent major depression with psychotic features, mood-incongruent",1519300343531624,Severe recurrent major depression,2.81E+11444100,Mood disorder,46206005438727,Atypical depressive disorder,191659001
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