Skip to content
@PGScatalog

The Polygenic Score (PGS) Catalog

Code repository for the Polygenic Score (PGS) Catalog, an open database of PGS and the relevant metadata needed to apply and evaluate them correctly

Pinned Loading

  1. pgsc_calc pgsc_calc Public

    The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

    Nextflow 121 21

  2. pygscatalog pygscatalog Public

    Python applications and libraries for working with PGS data and the PGS Catalog

    Python 6 1

  3. PGS_Catalog PGS_Catalog Public

    An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

    Python 9 5

  4. pgs-harmonizer pgs-harmonizer Public

    A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.

    Python 4 2

Repositories

Showing 10 of 10 repositories
  • PGS_Catalog Public

    An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

    PGScatalog/PGS_Catalog’s past year of commit activity
    Python 9 Apache-2.0 5 21 5 Updated Nov 7, 2024
  • pygscatalog Public

    Python applications and libraries for working with PGS data and the PGS Catalog

    PGScatalog/pygscatalog’s past year of commit activity
    Python 6 Apache-2.0 1 8 2 Updated Nov 6, 2024
  • pgs_template_validator Public

    Standalone Python validator for the PGS Catalog Curation Template (Metadata)

    PGScatalog/pgs_template_validator’s past year of commit activity
    Python 0 Apache-2.0 2 0 1 Updated Nov 1, 2024
  • pgsc_calc Public

    The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

    PGScatalog/pgsc_calc’s past year of commit activity
    Nextflow 121 Apache-2.0 21 16 0 Updated Nov 1, 2024
  • pgs-harmonizer Public

    A pipeline to format and harmonise Polygenic Score (PGS) Catalog Scoring Files within and between different genome builds.

    PGScatalog/pgs-harmonizer’s past year of commit activity
    Python 4 Apache-2.0 2 5 (1 issue needs help) 1 Updated Sep 3, 2024
  • fraposa_pgsc Public Forked from daviddaiweizhang/fraposa

    Tools to perform ancestry projection to a reference dataset within the calculator pipeline (pgsc_calc)

    PGScatalog/fraposa_pgsc’s past year of commit activity
    Python 3 3 5 0 Updated Aug 8, 2024
  • pgscatalog_utils Public

    (superseded by pygscatalog) Utilities for working with PGS Catalog API and scoring files

    PGScatalog/pgscatalog_utils’s past year of commit activity
    Python 4 Apache-2.0 3 8 0 Updated Jun 25, 2024
  • pgs_metadata_exports Public

    Package to export PGS Catalog metadata

    PGScatalog/pgs_metadata_exports’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Nov 16, 2023
  • pgs_variants_coords Public

    Repository to fetch and store the variant locations from Polygenic Score files, using their rsIDs

    PGScatalog/pgs_variants_coords’s past year of commit activity
    Python 0 Apache-2.0 1 0 1 Updated Nov 1, 2023
  • pgs_scoringfile_validator Public archive Forked from EBISPOT/sum-stats-formatter

    Formatting and validating scripts for Polygenic Scoring files

    PGScatalog/pgs_scoringfile_validator’s past year of commit activity
    Python 0 4 0 0 Updated Jun 8, 2022

Top languages

Loading…

Most used topics

Loading…