Store positions to integrers

PathoGenOmics-Lab · Sep 13, 2023 · f8d28e7 · f8d28e7
1 parent 0fb3a93
commit f8d28e7
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/scripts/weighted_distances.py b/workflow/scripts/weighted_distances.py
@@ -105,7 +105,7 @@ def calc_fst_weir_cockerham(hs:float, ht:float) -> float:
 
 def get_dif_n(df:pd.DataFrame, COV1:str, COV2:str, reference:str, freq:dict) -> float:
 
-    positions = df["POS"].unique().tolist()
+    positions = df["POS"].astype("Int64").unique().tolist()
     if len(positions) == 0:
         return 0