Added files for 2.2.0

Plant-Food-Research-Open · Nov 5, 2024 · ea2df77 · ea2df77
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diff --git a/.gitignore b/.gitignore
@@ -1 +1,16 @@
-.DS_Store
+.nextflow*
+work/
+data/
+results/
+.DS_Store
+testing/
+testing*
+*.pyc
+
+# PFR files
+*.stdout
+*.stderr
+
+# nf-test files
+.nf-test/
+.nf-test.log
diff --git a/hic/FI1.hic b/hic/FI1.hic
diff --git a/hic/hicqc/SRR8238190.on.FI1_qc_report.pdf b/hic/hicqc/SRR8238190.on.FI1_qc_report.pdf
diff --git a/index.html b/index.html
diff --git a/kraken2/FI1.kraken2.krona.html b/kraken2/FI1.kraken2.krona.html
diff --git a/ncbi_fcs_gx/FI1.fcs.gx.krona.html b/ncbi_fcs_gx/FI1.fcs.gx.krona.html
@@ -6623,111 +6623,103 @@
    <datasets>
     <dataset>FI1.fcs.gx.krona</dataset>
    </datasets>
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+   <color attribute="score" hueStart="0" hueEnd="120" valueStart="11695.6941138412" valueEnd="11695.6941138412" default="false" ></color>
 <node name="Root">
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  <magnitude><val>35023690</val></magnitude>
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  <node name="Eukaryota">
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           <node name="Sordariomycetes">
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            <count><val>8</val></count>
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            <taxon><val href="147550">147550</val></taxon>
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            <node name="Hypocreomycetidae">
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                <node name="Epichloe bromicola">
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                 <members>
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                 <taxon><val href="79588">79588</val></taxon>
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                </node>
               </node>
              </node>

diff --git a/synteny/FI1.on.JAD.all/FI1.on.JAD.all.html b/synteny/FI1.on.JAD.all/FI1.on.JAD.all.html
diff --git a/synteny/FI1.on.TT_2021a.all/FI1.on.TT_2021a.all.html b/synteny/FI1.on.TT_2021a.all/FI1.on.TT_2021a.all.html