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Original file line number | Diff line number | Diff line change |
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@@ -1 +1 @@ | ||
0.1.7 | ||
0.1.8-dev0 |
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@@ -1,7 +1,7 @@ | ||
{ | ||
"name": "Nyxus plugin", | ||
"version": "0.1.7", | ||
"containerId": "polusai/nyxus-tool:0.1.7", | ||
"version": "0.1.8-dev0", | ||
"containerId": "polusai/nyxus-tool:0.1.8-dev0", | ||
"title": "Nyxus plugin", | ||
"description": "Nyxus plugin allows to make use of parallel pocessing for extracting nyxus features", | ||
"author": "Nick Schaub ([email protected]), Hamdah Shafqat Abbasi ([email protected])", | ||
|
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@@ -1,6 +1,6 @@ | ||
[tool.poetry] | ||
name = "polus-images-features-nyxus-plugin" | ||
version = "0.1.7" | ||
version = "0.1.8-dev0" | ||
description = "" | ||
authors = [ | ||
"Nick Schaub <[email protected]>", | ||
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@@ -21,6 +21,7 @@ vaex = "^4.17.0" | |
preadator = "0.4.0.dev2" | ||
pytest-sugar = "^0.9.7" | ||
pytest-xdist = "^3.5.0" | ||
pyarrow = ">=16.0,<17.0" | ||
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[tool.poetry.group.dev.dependencies] | ||
bump2version = "^1.0.1" | ||
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2 changes: 1 addition & 1 deletion
2
features/nyxus-tool/src/polus/images/features/nyxus_plugin/__init__.py
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"""Nyxus Plugin.""" | ||
__version__ = "0.1.7" | ||
__version__ = "0.1.8-dev0" |
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@@ -1,4 +1,4 @@ | ||
# Pixel segmentation eval (v0.1.12) | ||
# Pixel segmentation eval (v0.1.13-dev0) | ||
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Plugin to generate evaluation metrics for pixel-wise comparison of ground truth and predicted images. Contact [Vishakha Goyal](mailto:[email protected]) , [Hamdah Shafqat Abbasi](mailto:[email protected]) for more information. | ||
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1 +1 @@ | ||
0.1.12 | ||
0.1.13-dev0 |
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@@ -1,14 +1,14 @@ | ||
{ | ||
"name": "Pixel Segmentation Eval", | ||
"version": "0.1.12", | ||
"version": "0.1.13-dev0", | ||
"title": "Pixel Segmentation Eval", | ||
"description": "Plugin to generate evaluation metrics for pixel-wise comparison of ground truth and predicted images.", | ||
"author": "Vishakha Goyal ([email protected])", | ||
"institution": "National Center for Advancing Translational Sciences, National Institutes of Health", | ||
"repository": "https://github.com/polusai/polus-plugins", | ||
"website": "https://ncats.nih.gov/preclinical/core/informatics", | ||
"citation": "", | ||
"containerId": "polusai/pixel-segmentation-eval-tool:0.1.12", | ||
"containerId": "polusai/pixel-segmentation-eval-tool:0.1.13-dev0", | ||
"baseCommand": [ | ||
"python3", | ||
"-m", | ||
|
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@@ -1,6 +1,6 @@ | ||
[tool.poetry] | ||
name = "polus-images-features-pixel-segmentation-eval" | ||
version = "0.1.12" | ||
version = "0.1.13-dev0" | ||
description = "" | ||
authors = [ | ||
"Vishakha Goyal <[email protected]>", | ||
|
@@ -18,6 +18,7 @@ tqdm = "^4.64.1" | |
tifffile="^2020.10.1" | ||
vaex = "^4.7.0" | ||
scipy = "1.9.3" | ||
pyarrow = ">=16.0,<17.0" | ||
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||
[tool.poetry.group.dev.dependencies] | ||
bump2version = "^1.0.1" | ||
|
2 changes: 1 addition & 1 deletion
2
...ixel-segmentation-eval-tool/src/polus/images/features/pixel_segmentation_eval/__init__.py
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@@ -1,3 +1,3 @@ | ||
"""Pixel segmentation eval package.""" | ||
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||
__version__ = "0.1.12" | ||
__version__ = "0.1.13-dev0" |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1 +1 @@ | ||
0.2.5 | ||
0.2.6-dev0 |
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@@ -1,14 +1,14 @@ | ||
{ | ||
"name": "Region Segmentation Eval", | ||
"version": "0.2.5", | ||
"version": "0.2.6-dev0", | ||
"title": "Region Segmentation Eval", | ||
"description": "Plugin to generate evaluation metrics for region-wise comparison of ground truth and predicted images.", | ||
"author": "Vishakha Goyal ([email protected]), Hamdah Shafqat Abbasi ([email protected])", | ||
"institution": "National Center for Advancing Translational Sciences, National Institutes of Health", | ||
"repository": "https://github.com/polusai/polus-plugins", | ||
"website": "https://ncats.nih.gov/preclinical/core/informatics", | ||
"citation": "", | ||
"containerId": "polusai/region-segmentation-eval-tool:0.2.5", | ||
"containerId": "polusai/region-segmentation-eval-tool:0.2.6-dev0", | ||
"baseCommand": [ | ||
"python3", | ||
"-m", | ||
|
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---|---|---|
@@ -1,6 +1,6 @@ | ||
[tool.poetry] | ||
name = "polus-images-features-region-segmentation-eval" | ||
version = "0.2.5" | ||
version = "0.2.6-dev0" | ||
description = "" | ||
authors = [ | ||
"Vishakha Goyal <[email protected]>", | ||
|
@@ -16,14 +16,15 @@ filepattern = "^2.0.1" | |
typer = "^0.7.0" | ||
tqdm = "^4.64.1" | ||
scikit-image = "^0.19.3" | ||
scikit-learn="^0.24.2" | ||
opencv_python="^4.5.1.48" | ||
tifffile="^2020.10.1" | ||
blake3 = "^0.3.3" | ||
llvmlite = "^0.39.1" | ||
fastapi = "^0.92.0" | ||
vaex = "^4.7.0" | ||
numpy = "<2.0.0" | ||
pyarrow = ">=16.0,<17.0" | ||
scikit-learn = "^1.5.1" | ||
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[tool.poetry.group.dev.dependencies] | ||
bump2version = "^1.0.1" | ||
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2 changes: 1 addition & 1 deletion
2
...ion-segmentation-eval-tool/src/polus/images/features/region_segmentation_eval/__init__.py
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---|---|---|
@@ -1,2 +1,2 @@ | ||
"""Region segmentation eval package.""" | ||
__version__ = "0.2.5" | ||
__version__ = "0.2.6-dev0" |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1 +1 @@ | ||
0.1.5 | ||
0.1.6-dev0 |
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@@ -1,14 +1,14 @@ | ||
{ | ||
"name": "Ome_to_microjson", | ||
"version": "0.1.5", | ||
"version": "0.1.6-dev0", | ||
"title": "Convert binary segmentations to micojson", | ||
"description": "This plugin create a microjson of polygon coordinates (rectangle, encodings) of binary segmentations.", | ||
"author": "Hamdah Shafqat abbasi ([email protected])", | ||
"institution": "National Center for Advancing Translational Sciences, National Institutes of Health", | ||
"repository": "https://github.com/labshare/polus-plugins", | ||
"website": "https://ncats.nih.gov/preclinical/core/informatics", | ||
"citation": "", | ||
"containerId": "polusai/ome-to-microjson-tool:0.1.5", | ||
"containerId": "polusai/ome-to-microjson-tool:0.1.6-dev0", | ||
"baseCommand": [ | ||
"python3", | ||
"-m", | ||
|
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,6 +1,6 @@ | ||
[tool.poetry] | ||
name = "polus-images-visualization-ome-to-microjson" | ||
version = "0.1.5" | ||
version = "0.1.6-dev0" | ||
description = "This plugin create a microjson of polygon coordinates of binary and label segmentations" | ||
authors = ["Hamdah Shafqat abbasi <[email protected]>"] | ||
readme = "README.md" | ||
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@@ -19,6 +19,7 @@ llvmlite = "^0.40.1" | |
vaex = "^4.17.0" | ||
scikit-image = "^0.20.0" | ||
memory-profiler = "^0.61.0" | ||
pyarrow = ">=16.0,<17.0" | ||
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[tool.poetry.group.dev.dependencies] | ||
bump2version = "^1.0.1" | ||
|
2 changes: 1 addition & 1 deletion
2
...ization/ome-to-microjson-tool/src/polus/images/visualization/ome_to_microjson/__init__.py
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@@ -1,3 +1,3 @@ | ||
"""Ome micojson package.""" | ||
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__version__ = "0.1.5" | ||
__version__ = "0.1.6-dev0" |
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1 +1 @@ | ||
0.1.2 | ||
0.1.3-dev0 |
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---|---|---|
@@ -1,7 +1,7 @@ | ||
{ | ||
"name": "Tabular To Microjson", | ||
"version": "0.1.2", | ||
"containerId": "polusai/tabular-to-microjson-tool:0.1.2", | ||
"version": "0.1.3-dev0", | ||
"containerId": "polusai/tabular-to-microjson-tool:0.1.3-dev0", | ||
"title": "Tabular To Microjson", | ||
"description": "Generates JSON from tabular data.", | ||
"author": "Hamdah Shafqat Abbasi ([email protected])", | ||
|
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@@ -1,6 +1,6 @@ | ||
[tool.poetry] | ||
name = "polus-images-visualization-tabular-to-microjson" | ||
version = "0.1.2" | ||
version = "0.1.3-dev0" | ||
description = "" | ||
authors = ["Hamdah Shafqat abbasi <[email protected]>"] | ||
readme = "README.md" | ||
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@@ -15,6 +15,7 @@ pandas = "^2.0.3" | |
microjson = "^0.1.9" | ||
vaex = "^4.17.0" | ||
pydantic = "^2.4.2" | ||
pyarrow = ">=16.0,<17.0" | ||
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[tool.poetry.group.dev.dependencies] | ||
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2 changes: 1 addition & 1 deletion
2
...tabular-to-microjson-tool/src/polus/images/visualization/tabular_to_microjson/__init__.py
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@@ -1,2 +1,2 @@ | ||
"""Tabular to microjson package.""" | ||
__version__ = "0.1.2" | ||
__version__ = "0.1.3-dev0" |