Added ict.yaml for dim stacking (#555)

* chore: added ict.yaml for dim stacking

* Bump version: 0.1.1-dev2 → 0.1.1-dev3

* fix: ict after pper review

formats/image-dimension-stacking-tool/.bumpversion.cfg

@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.1.1-dev2
+current_version = 0.1.1-dev3
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+)(?P<dev>\d+))?
@@ -26,4 +26,6 @@ replace = version = "{new_version}"
 
 [bumpversion:file:plugin.json]
 
+[bumpversion:file:ict.yaml]
+
 [bumpversion:file:src/polus/images/formats/image_dimension_stacking/__init__.py]

formats/image-dimension-stacking-tool/README.md

@@ -1,4 +1,4 @@
-# Image dimension stacking(0.1.1-dev2)
+# Image dimension stacking(0.1.1-dev3)
 
 This plugin leverages the [filepattern](https://filepattern2.readthedocs.io/en/latest/Home.html) library and employs the filepattern `groupBy` functionality to enable the matching of image filenames, facilitating their stacking into multi-dimensional images.
 

formats/image-dimension-stacking-tool/VERSION

@@ -1 +1 @@
-0.1.1-dev2
+0.1.1-dev3

formats/image-dimension-stacking-tool/ict.yaml

@@ -0,0 +1,51 @@
+author:
+- Nick Schaub
+- Hamdah Shafqat Abbasi
+contact: [email protected]
+container: polusai/image-dimension-stacking-tool:0.1.1-dev3
+description: Stacking of image dimensions (c, z, t) to create a multidimensional image.
+entrypoint: python3 -m polus.images.formats.image_dimension_stacking
+inputs:
+- description: Input image collection to be processed by this plugin.
+  format:
+  - collection
+  name: inpDir
+  required: true
+  type: path
+- description: Filename pattern used to separate data
+  format:
+  - string
+  name: filePattern
+  required: true
+  type: string
+- description: Generate an output preview
+  format:
+  - boolean
+  name: preview
+  required: false
+  type: boolean
+name: polusai/ImageDimensionStacking
+outputs:
+- description: Output collection
+  format:
+  - collection
+  name: outDir
+  required: true
+  type: path
+repository: https://github.com/PolusAI/image-tools
+specVersion: 1.0.0
+title: Image Dimension Stacking
+ui:
+- description: Input image collection to be processed by this plugin
+  key: inputs.inpDir
+  title: Input collection
+  type: path
+- description: Filename pattern used to separate data
+  key: inputs.filePattern
+  title: Filename pattern
+  type: text
+- description: Generate an output preview
+  key: inputs.preview
+  title: Generate preview
+  type: boolean
+version: 0.1.1-dev0

formats/image-dimension-stacking-tool/plugin.json

@@ -1,13 +1,13 @@
 {
   "name": "Image Dimension Stacking",
-  "version": "0.1.1-dev2",
+  "version": "0.1.1-dev3",
   "title": "Stacking of image dimensions (c, z, t) to create a multidimensional image.",
   "description": "Stacking of image dimensions (c, z, t) to create a multidimensional image.",
   "author": "Nick Schaub ([email protected]), Hamdah Shafqat Abbasi ([email protected])",
   "institution": "National Center for Advancing Translational Sciences, National Institutes of Health",
   "repository": "https://github.com/PolusAI/image-tools",
   "website": "https://ncats.nih.gov/preclinical/core/informatics",
-  "containerId": "polusai/image-dimension-stacking-tool:0.1.1-dev2",
+  "containerId": "polusai/image-dimension-stacking-tool:0.1.1-dev3",
   "baseCommand": [
     "python3",
     "-m",

formats/image-dimension-stacking-tool/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "polus-images-formats-image-dimension-stacking"
-version = "0.1.1-dev2"
+version = "0.1.1-dev3"
 description = "Stacking multi-dimensional images"
 authors = [
            "Nick Schaub <[email protected]>",

formats/image-dimension-stacking-tool/src/polus/images/formats/image_dimension_stacking/__init__.py

@@ -1,3 +1,3 @@
 """Image dimension stacking package."""
 
-__version__ = "0.1.1-dev2"
+__version__ = "0.1.1-dev3"