omero-download-tool #535
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hamshkhawar
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bengtl
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Aug 15, 2024
utils/omero-download-tool/README.md
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| | --------------- | ------------------------------------------------------------ | ------ | ----------- | | ||
| | `--dataType` | Object types to be retreived from Omero Server | Input | String | | ||
| | `--name ` | Name of an object | Input | String | | ||
| | `--id ` | Identification of an object of an object | Input | Integer | |
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| | `--id ` | Identification of an object of an object | Input | Integer | | |
| | `--objectId ` | Identification of an object of an object | Input | Integer | |
bengtl
reviewed
Aug 15, 2024
utils/omero-download-tool/README.md
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| ## Sample docker command: | ||
| ```bash | ||
| docker run -e OMERO_USERNAME=$OMERO_USERNAME -e OMERO_PASSWORD=$OMERO_PASSWORD -v /home/ec2-user/data/:/home/ec2-user/data/ polusai/omero-download-tool:0.1.0-dev0 --dataType="plate" --id=108 --outDir=/home/ec2-user/data/output``` |
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| docker run -e OMERO_USERNAME=$OMERO_USERNAME -e OMERO_PASSWORD=$OMERO_PASSWORD -v /home/ec2-user/data/:/home/ec2-user/data/ polusai/omero-download-tool:0.1.0-dev0 --dataType="plate" --id=108 --outDir=/home/ec2-user/data/output``` | |
| docker run -e OMERO_USERNAME=$OMERO_USERNAME -e OMERO_PASSWORD=$OMERO_PASSWORD -v /home/ec2-user/data/:/home/ec2-user/data/ polusai/omero-download-tool:0.1.0-dev0 --dataType="plate" --objectId=108 --outDir=/home/ec2-user/data/output``` |
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@bengtl I have removed example folder and modify preview function
bengtl
suggested changes
Aug 15, 2024
fixed |
bengtl
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Aug 16, 2024
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This PR allows to retrieve datasets from omero ncats server