POL5471 wholeslide gpu update #669
Workflow file for this run
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| name: Build Wheels | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| jobs: | |
| build_wheels: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| MACOSX_DEPLOYMENT_TARGET: "10.15" | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, macos-12, windows-latest] | |
| cibw_archs: ["auto64"] | |
| cibw_build: ["cp38-*", "cp39-*", "cp310-*", "cp311-*", "cp312-*"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| name: Check out | |
| with: | |
| submodules: recursive | |
| - uses: ilammy/msvc-dev-cmd@v1 | |
| name: Add MSVS Path | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: '3.9' | |
| - name: Install cibuildwheel | |
| run: | | |
| python -m pip install cibuildwheel==2.16.2 delvewheel wheel | |
| - name: Building wheels | |
| run: | | |
| python -m cibuildwheel --output-dir dist | |
| env: | |
| CIBW_BUILD: ${{ matrix.cibw_build }} | |
| CIBW_SKIP: "*musllinux*" | |
| CIBW_BUILD_VERBOSITY: 3 | |
| CIBW_MANYLINUX_X86_64_IMAGE: manylinux2014 | |
| CIBW_BEFORE_ALL_MACOS: brew install llvm@16 && | |
| bash ci-utils/install_prereq_linux.sh --build_arrow yes && | |
| mkdir -p /tmp/nyxus_bld && | |
| cp -r local_install /tmp/nyxus_bld | |
| CIBW_BEFORE_ALL_LINUX: sed -i s/mirror.centos.org/vault.centos.org/g /etc/yum.repos.d/*.repo && | |
| sed -i s/^#.*baseurl=http/baseurl=http/g /etc/yum.repos.d/*.repo && | |
| sed -i s/^mirrorlist=http/#mirrorlist=http/g /etc/yum.repos.d/*.repo && | |
| yum install -y llvm libevent-devel openssl-devel && | |
| bash ci-utils/install_arrow_yum.sh && | |
| bash ci-utils/install_prereq_linux.sh --build_arrow no && | |
| mkdir -p /tmp/nyxus_bld && | |
| cp -r local_install /tmp/nyxus_bld | |
| CIBW_BEFORE_ALL_WINDOWS: ci-utils\install_prereq_win.bat && | |
| xcopy /E /I /y local_install C:\TEMP\nyxus_bld\local_install | |
| CIBW_ENVIRONMENT_MACOS: REPAIR_LIBRARY_PATH="/tmp/nyxus_bld/local_install/lib:/tmp/nyxus_bld/local_install/lib64" PATH="$(brew --prefix llvm@16)/bin:$PATH" COMPILER="/usr/local/opt/llvm@16/bin/clang++" CFLAGS="-I /usr/local/include -I/usr/local/opt/llvm@16/include" CXXFLAGS="-I /usr/local/include -I/usr/local/opt/llvm@16/include" LDFLAGS="-L /usr/local/lib -L/usr/local/opt/llvm@16/lib -Wl,-rpath,/usr/local/opt/llvm@16/lib" CXX="/usr/local/opt/llvm@16/bin/clang++" CC="/usr/local/opt/llvm@16/bin/clang" NYXUS_DEP_DIR="/tmp/nyxus_bld/local_install" | |
| CIBW_ENVIRONMENT_LINUX: LD_LIBRARY_PATH="/tmp/nyxus_bld/local_install/lib:/tmp/nyxus_bld/local_install/lib64:$LD_LIBRARY_PATH" NYXUS_DEP_DIR="/tmp/nyxus_bld/local_install" | |
| CIBW_ENVIRONMENT_WINDOWS: PATH="C:\\TEMP\\nyxus_bld\\local_install\\bin;$PATH" NYXUS_DEP_DIR="C:\\TEMP\\nyxus_bld\\local_install" | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: DYLD_LIBRARY_PATH=$REPAIR_LIBRARY_PATH delocate-listdeps {wheel} && DYLD_LIBRARY_PATH=$REPAIR_LIBRARY_PATH delocate-wheel --require-archs {delocate_archs} -w {dest_dir} {wheel} | |
| CIBW_REPAIR_WHEEL_COMMAND_WINDOWS: "delvewheel repair -w {dest_dir} {wheel}" | |
| CIBW_ARCHS: ${{ matrix.cibw_archs }} | |
| CIBW_TEST_REQUIRES: numpy pandas pyarrow pytest bfio | |
| CIBW_TEST_COMMAND: pytest -vv {project}/tests/python | |
| - name: Upload Artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: nyxus-wheels | |
| path: dist/*.whl | |
| retention-days: 1 | |
| build_wheels_apple_arm64: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| MACOSX_DEPLOYMENT_TARGET: "11.0" | |
| strategy: | |
| matrix: | |
| os: [macos-13-xlarge] | |
| cibw_archs: ["arm64"] | |
| cibw_build: ["cp39-*", "cp310-*", "cp311-*", "cp312-*"] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| name: Check out | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: '3.11' | |
| - name: Install cibuildwheel | |
| run: | | |
| python -m pip install cibuildwheel==2.16.2 delocate wheel | |
| - name: Building wheels | |
| run: | | |
| python -m cibuildwheel --output-dir dist | |
| env: | |
| CIBW_BUILD: ${{ matrix.cibw_build }} | |
| CIBW_BUILD_VERBOSITY: 3 | |
| CIBW_ARCHS_MACOS: arm64 | |
| CIBW_BEFORE_ALL_MACOS: brew install llvm@16 && | |
| sudo xcode-select -s /Applications/Xcode_14.2.app && | |
| bash ci-utils/install_prereq_linux.sh --build_arrow yes && | |
| mkdir -p /tmp/nyxus_bld && | |
| cp -r local_install /tmp/nyxus_bld | |
| CIBW_ENVIRONMENT_MACOS: REPAIR_LIBRARY_PATH="/tmp/nyxus_bld/local_install/lib:/tmp/nyxus_bld/local_install/lib64" PATH="/opt/homebrew/opt/llvm@16/bin:$PATH" COMPILER="/opt/homebrew/opt/llvm@16/bin/clang++" CFLAGS="-I/opt/homebrew/opt/llvm@16/include" CPPFLAGS="-I/opt/homebrew/opt/llvm@16/include" LDFLAGS="-L/opt/homebrew/opt/llvm@16/lib -L/opt/homebrew/opt/llvm@16/lib/c++ -Wl,-rpath,/opt/homebrew/opt/llvm@16/lib/c++" CXX="/opt/homebrew/opt/llvm@16/bin/clang++" CC="/opt/homebrew/opt/llvm@16/bin/clang" NYXUS_DEP_DIR="/tmp/nyxus_bld/local_install" | |
| CIBW_REPAIR_WHEEL_COMMAND_MACOS: DYLD_LIBRARY_PATH=$REPAIR_LIBRARY_PATH delocate-listdeps {wheel} && DYLD_LIBRARY_PATH=$REPAIR_LIBRARY_PATH delocate-wheel --require-archs {delocate_archs} -w {dest_dir} {wheel} | |
| CIBW_ARCHS: ${{ matrix.cibw_archs }} | |
| CIBW_TEST_REQUIRES: numpy pandas pyarrow pytest bfio | |
| CIBW_TEST_COMMAND: pytest -vv {project}/tests/python | |
| - name: Upload Artifact | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: nyxus-wheels-apple-arm64 | |
| path: dist/*.whl | |
| retention-days: 1 |