update docker build

.github/workflows/publish_docker.yml

@@ -28,7 +28,7 @@ jobs:
     - name: Copy 3rd-party libraries to staging directory
       working-directory: ${{github.workspace}}
       run: |
-        bash ci-utils/docker_copy_3rd_party_libs.sh ${{github.workspace}}/miniconda-for-nyxus/envs/nyxus-3.7
+        bash ci-utils/docker_copy_3rd_party_libs.sh ${{github.workspace}}/miniconda-for-nyxus/envs/nyxus-3.8
 
     - name: Create Version File
       run: python setup.py --version| grep -v init > VERSION

ci-utils/build_conda.sh

@@ -17,7 +17,7 @@ MINICONDA=$PWD/miniconda-for-nyxus # Modify this to your preferred location for
 CPP_BUILD_DIR=$PWD
 SRC_ROOT=$1 #source dir location
 NYXUS_ROOT=$SRC_ROOT
-PYTHON=3.7
+PYTHON=3.8
 
 git config --global --add safe.directory $NYXUS_ROOT
 
@@ -62,8 +62,6 @@ setup_miniconda
 conda activate nyxus-$PYTHON
 export NYXUS_HOME=$CONDA_PREFIX
 #Build CLI
-export CMAKE_ARGS="-DCMAKE_PREFIX_PATH=$CONDA_PREFIX -DCMAKE_INSTALL_PREFIX=$CONDA_PREFIX -DBUILD_CLI=ON -DUSEGPU=ON"
-echo $CMAKE_ARGS
 mkdir -p $CPP_BUILD_DIR
 pushd $CPP_BUILD_DIR
 cmake -DCMAKE_PREFIX_PATH=$CONDA_PREFIX \

ci-utils/docker_copy_3rd_party_libs.sh

@@ -16,15 +16,93 @@ fi
 
 mkdir -p 3rd_party_libs
 cp $1/lib/libblosc*.so* ./3rd_party_libs/
+cp $1/lib/libcufft*.so* ./3rd_party_libs/
+cp $1/lib/libtiff*.so* ./3rd_party_libs/
+cp $1/lib/libofstd*.so* ./3rd_party_libs/
+cp $1/lib/libdcmdata*.so* ./3rd_party_libs/
+cp $1/lib/libdcmjpeg*.so* ./3rd_party_libs/
+cp $1/lib/libdcmjpls*.so* ./3rd_party_libs/
+cp $1/lib/libdcmseg*.so* ./3rd_party_libs/
+cp $1/lib/libfmjpeg2k*.so* ./3rd_party_libs/
+cp $1/lib/libparquet*.so* ./3rd_party_libs/
+cp $1/lib/libarrow*.so* ./3rd_party_libs/
 cp $1/lib/./liblz4*.so* ./3rd_party_libs/
 cp $1/lib/./libsnappy*.so* ./3rd_party_libs/
 cp $1/lib/./libz*.so* ./3rd_party_libs/
 cp $1/lib/./libzstd*.so* ./3rd_party_libs/
-cp $1/lib/libtiff*.so* ./3rd_party_libs/
+
 cp $1/lib/./libwebp*.so* ./3rd_party_libs/
 cp $1/lib/./liblzma*.so* ./3rd_party_libs/
 cp $1/lib/./libLerc*.so* ./3rd_party_libs/
 cp $1/lib/./libjpeg*.so* ./3rd_party_libs/
 cp $1/lib/./libdeflate*.so* ./3rd_party_libs/
-cp $1/lib/./libdcm*.so* ./3rd_party_libs/
-cp $1/lib/./libfmjpeg2k*.so* ./3rd_party_libs/
+cp $1/lib/./liboflog*.so* ./3rd_party_libs/
+cp $1/lib/./libxml2*.so* ./3rd_party_libs/
+cp $1/lib/./libijg8*.so* ./3rd_party_libs/
+cp $1/lib/./libijg12*.so* ./3rd_party_libs/
+cp $1/lib/./libijg16*.so* ./3rd_party_libs/
+cp $1/lib/./libdcmimgle*.so* ./3rd_party_libs/
+cp $1/lib/./libdcmtkcharls*.so* ./3rd_party_libs/
+cp $1/lib/./libdcmfg*.so* ./3rd_party_libs/
+cp $1/lib/./libdcmiod*.so* ./3rd_party_libs/
+cp $1/lib/./libopenjp2*.so* ./3rd_party_libs/
+cp $1/lib/./libthrift*.so* ./3rd_party_libs/
+cp $1/lib/./libcrypto*.so* ./3rd_party_libs/
+cp $1/lib/./libbrotlienc*.so* ./3rd_party_libs/
+cp $1/lib/./libbrotlidec*.so* ./3rd_party_libs/
+cp $1/lib/./liborc*.so* ./3rd_party_libs/
+cp $1/lib/./libglog*.so* ./3rd_party_libs/
+cp $1/lib/./libutf8proc*.so* ./3rd_party_libs/
+cp $1/lib/./libbz2*.so* ./3rd_party_libs/
+cp $1/lib/./libgoogle_cloud_cpp_storage*.so* ./3rd_party_libs/
+cp $1/lib/./libaws-cpp-sdk-identity-management*.so* ./3rd_party_libs/
+cp $1/lib/./libaws-cpp-sdk-s3*.so* ./3rd_party_libs/
+cp $1/lib/./libaws-cpp-sdk-core*.so* ./3rd_party_libs/
+cp $1/lib/./libre2*.so* ./3rd_party_libs/
+cp $1/lib/./libgoogle_cloud_cpp_common*.so* ./3rd_party_libs/
+cp $1/lib/./libabsl_time*.so* ./3rd_party_libs/
+cp $1/lib/./libabsl_time_zone*.so* ./3rd_party_libs/
+cp $1/lib/./libaws-crt-cpp*.so* ./3rd_party_libs/
+cp $1/lib/././libsharpyuv*.so* ./3rd_party_libs/
+cp $1/lib/././libiconv*.so* ./3rd_party_libs/
+cp $1/lib/././libicui18n*.so* ./3rd_party_libs/
+cp $1/lib/././libicuuc*.so* ./3rd_party_libs/
+cp $1/lib/././libicudata*.so* ./3rd_party_libs/
+cp $1/lib/././libssl*.so* ./3rd_party_libs/
+cp $1/lib/././libbrotlicommon*.so* ./3rd_party_libs/
+cp $1/lib/././libprotobuf*.so* ./3rd_party_libs/
+cp $1/lib/././libgflags*.so* ./3rd_party_libs/
+cp $1/lib/././libgoogle_cloud_cpp_rest_internal*.so* ./3rd_party_libs/
+cp $1/lib/././libcrc32c*.so* ./3rd_party_libs/
+cp $1/lib/././libcurl*.so* ./3rd_party_libs/
+cp $1/lib/././libabsl_crc32c*.so* ./3rd_party_libs/
+cp $1/lib/././libabsl_str_format_internal*.so* ./3rd_party_libs/
+cp $1/lib/././libabsl_strings*.so* ./3rd_party_libs/
+cp $1/lib/././libabsl_strings_internal*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-cpp-sdk-cognito-identity*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-cpp-sdk-sts*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-c-event-stream*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-checksums*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-c-common*.so* ./3rd_party_libs/
+cp $1/lib/././libabsl_int128*.so* ./3rd_party_libs/
+cp $1/lib/././libabsl_base*.so* ./3rd_party_libs/
+cp $1/lib/././libabsl_raw_logging_internal*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-c-mqtt*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-c-s3*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-c-auth*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-c-http*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-c-io*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-c-cal*.so* ./3rd_party_libs/
+cp $1/lib/././libaws-c-sdkutils*.so* ./3rd_party_libs/
+cp $1/lib/./././libnghttp2*.so* ./3rd_party_libs/
+cp $1/lib/./././libssh2*.so* ./3rd_party_libs/
+cp $1/lib/./././libgssapi_krb5*.so* ./3rd_party_libs/
+cp $1/lib/./././libabsl_crc_internal*.so* ./3rd_party_libs/
+cp $1/lib/./././libabsl_spinlock_wait*.so* ./3rd_party_libs/
+cp $1/lib/./././libaws-c-compression*.so* ./3rd_party_libs/
+cp $1/lib/./././libs2n*.so* ./3rd_party_libs/
+cp $1/lib/././././libkrb5*.so* ./3rd_party_libs/
+cp $1/lib/././././libk5crypto*.so* ./3rd_party_libs/
+cp $1/lib/././././libcom_err*.so* ./3rd_party_libs/
+cp $1/lib/././././libkrb5support*.so* ./3rd_party_libs/
+cp $1/lib/././././libkeyutils*.so* ./3rd_party_libs/