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Preparing 0.7.0 release #129

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merged 9 commits into from
Aug 9, 2023
Merged

Preparing 0.7.0 release #129

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60021a0
Preparing 0.7.0 release
sameeul Aug 1, 2023
483f497
add python 3.11 wheels
sameeul Aug 1, 2023
67fee74
build with arrow support
sameeul Aug 1, 2023
dc5400a
update docker build
sameeul Aug 2, 2023
32ea05c
Update docs
sameeul Aug 2, 2023
79f50a1
update docker build prep and some docs
sameeul Aug 3, 2023
3f36ce5
Docker dependency update
sameeul Aug 3, 2023
2440457
update docs as per review comments
sameeul Aug 4, 2023
42f060b
remove old stale file
sameeul Aug 8, 2023
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4 changes: 3 additions & 1 deletion CMakeLists.txt
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Expand Up @@ -25,7 +25,9 @@ if(CUDA_FOUND AND USEGPU)
else () # for now, we assume CUDA 11.2+ supports all these archs.
set(CUDA_ARCH_LIST "35;37;50;72;75;80;86")
endif()
else()
elseif (CUDA_VERSION_MAJOR STREQUAL "12")
set(CUDA_ARCH_LIST "52;60;72;75;80;86;89;90")
else() # some old CUDA version (<10)
set(CUDA_ARCH_LIST "50")
endif()
elseif((NOT CUDA_FOUND) AND USEGPU)
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2 changes: 0 additions & 2 deletions Dockerfile
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Expand Up @@ -17,10 +17,8 @@ COPY ${LIB_LOCATION}/*.so* ${LIB_DIR}/

#Copy executable
COPY nyxus ${EXEC_DIR}/
COPY nyxushie ${EXEC_DIR}/

RUN chmod +x ${EXEC_DIR}/nyxus
RUN chmod +x ${EXEC_DIR}/nyxushie

WORKDIR ${EXEC_DIR}

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18 changes: 10 additions & 8 deletions plugin.json
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@@ -1,7 +1,7 @@
{
"name": "Nyxus",
"version": "0.4.1",
"containerId": "polusai/nyxus:0.4.2",
"version": "0.7.0",
"containerId": "polusai/nyxus:0.7.0",
"title": "Nyxus feature extraction",
"description": "Nyxus feature extractor",
"author": "friskluft + hsidky",
Expand Down Expand Up @@ -1123,13 +1123,15 @@
"required": true
},
{
"name": "csvFile",
"description": "csvfile : singlecsv for saving values in one csv file and separate csv to save values for each image in separate csv file",
"name": "outputType",
"description": "outputType : singlecsv for saving values in one csv file and separate csv to save values for each image in separate csv file, arrow and parquet for saving in those file formats respectively",
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"type": "enum",
"options": {
"values": [
"singlecsv",
"separatecsv"
"separatecsv",
"arrow",
"parquet"
]
},
"required": true
Expand Down Expand Up @@ -1187,9 +1189,9 @@
"description": "Select features"
},
{
"key": "inputs.csvFile",
"title": "Output csv file",
"description": "Save csv file separately for each image or one csv file for all images"
"key": "inputs.outputType",
"title": "Output file type",
"description": "Save csv file separately for each image or one csv file for all images. Alternatively, outuput can be written as arrow or parquet file"
},
{
"key": "inputs.embeddedpixelsize",
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