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cosmetic edits
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Pombert-JF committed Mar 6, 2024
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8 changes: 4 additions & 4 deletions README.md
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Expand Up @@ -405,7 +405,7 @@ Custom colors for [Circos](https://circos.ca/) plots can be loaded directly from
##### Running SYNY with custom colors loaded from a tab-delimited file:
```Bash
SYNY=~/SYNY_ENCE_CC ## Replace by desired SYNY output directory
COLORS=~/custom_color_2.txt ## Repplace de desired custom color file
COLORS=~/custom_color_2.txt ## Replace by desired custom color file

run_syny.pl \
-a $DATA/*.gbff.gz \
Expand Down Expand Up @@ -433,7 +433,7 @@ circos \
<img src="https://github.com/PombertLab/SYNY/blob/main/Images/encephalitozoon_cc.png">
</p>

##### Listing available custom color presets:
##### Listing custom color presets available in SYNY:
```
run_syny.pl --list_preset
Expand All @@ -443,7 +443,7 @@ chloropicon 20 colors
encephalitozoon 11 colors
```

##### Running SYNY with a custom colors preset:
##### Running SYNY with a custom color preset:
```Bash
SYNY=~/SYNY_ENCE_CC_PRESET ## Replace by desired SYNY output directory

Expand All @@ -468,7 +468,7 @@ circos \
-outputfile encephalitozoon_blues.png
```

##### Example of an image generated with Circos and SYNY comparing a total of 3 genomes (using the blues custom color preset):
##### Example of an image generated with the blues custom color preset:
<p align="left">
<img src="https://github.com/PombertLab/SYNY/blob/main/Images/encephalitozoon_blues.png">
</p>
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