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Improved support for moved/renamed/deprecated modules #3385

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Improved support for moved/renamed/deprecated modules #3385

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Commits on Jun 4, 2024

  1. Archiving current state of OnlineDocs

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  2. Initial reorganization of Pyomo documentation (replicating 91e9f59 and … 

    …6e7cd39 by @blnicho)
    @jsiirola
    jsiirola committed Jun 4, 2024
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  3. Update / clean up .gitignore

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Commits on Jul 31, 2024

  1. Merge branch 'main' into doc-reorg

    @blnicho
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  2. Porting recent changes in docs to equivalent sections in the doc-reor… 

    …g branch
    @blnicho
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  3. Fixing typo

    @blnicho
    blnicho authored Jul 31, 2024
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Commits on Aug 23, 2024

  1. Merge branch 'main' into doc-reorg

    @blnicho
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  2. Updating doc-reorg branch with recent doc changes from main

    @blnicho
    blnicho committed Aug 23, 2024
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  3. Reorganizing top-level TOC

    @blnicho
    blnicho committed Aug 23, 2024
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  4. Filling out index

    @emma58
    emma58 committed Aug 23, 2024
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  5. Playing with whitespace

    @emma58
    emma58 committed Aug 23, 2024
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  6. removing newlines in table

    @emma58
    emma58 committed Aug 23, 2024
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  7. Learning how tables work in rst'

    @emma58
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  8. Link to future, removing duplicate related packages'

    @emma58
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  9. wider table columns

    @emma58
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  10. renaming user_guides to user_explanations

    @emma58
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  11. Adding and organizing the user explanations directory

    @emma58
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  12. resolve table formatting

    @jsiirola
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  13. Reorganizing docs

    @blnicho
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  14. Merge branch 'doc-reorg' of https://github.com/Pyomo/pyomo into doc-r… 

    …eorg
    @blnicho
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  15. Moving developer docs to developer utilities folder in user_explanati… 

    …ons'
    @emma58
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  16. Merge branch 'doc-reorg' of github.com:Pyomo/pyomo into doc-reorg

    @emma58
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  17. Removing developer_guide folder

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Commits on Aug 27, 2024

  1. Restore logic to generate SPY files

    @jsiirola
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  2. Update doc include paths to be relative to doc root

    @jsiirola
    jsiirola committed Aug 27, 2024
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  3. NFC: fix doc indentation

    @jsiirola
    jsiirola committed Aug 27, 2024
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  4. Update doc references

    @jsiirola
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  5. Doc: fix autodoc import

    @jsiirola
    jsiirola committed Aug 27, 2024
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  6. Re-add missing src directly dropped during reorg

    @jsiirola
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  7. restore 'make clean' target

    @jsiirola
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  8. doc: add missing index.rst

    @jsiirola
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  9. Move errors.rst to not break links from code

    @jsiirola
    jsiirola committed Aug 27, 2024
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  10. Simplifying directory names

    @jsiirola
    jsiirola committed Aug 27, 2024
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  11. Reorganize getting-started / how-to 

    - rework main index generation (leverage toctree)
- break apart working_models into sections
- fix broken links
    @jsiirola
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  12. Renaming some directories

    @jsiirola
    jsiirola committed Aug 27, 2024
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  13. Moving some files around

    @jsiirola
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  14. Reorganize explanations & reference

    @jsiirola
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  15. Track move of kernel discussion

    @jsiirola
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  16. Move kernel API docs

    @jsiirola
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  17. Fix link, improve page title

    @jsiirola
    jsiirola committed Aug 27, 2024
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  18. Improve diataxis table formatting

    @jsiirola
    jsiirola committed Aug 27, 2024
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  19. More style tweaks

    @jsiirola
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Commits on Aug 28, 2024

  1. Merge branch 'main' into doc-reorg

    @jsiirola
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  2. reworking src to restore history

    @jsiirola
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  3. Restoring src from Archive

    @jsiirola
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  4. Doc: fixing typo

    @jsiirola
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  5. Add a make target to help with development

    @jsiirola
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  6. Only raise DeferredImportError if we are not building docs

    @jsiirola
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Commits on Aug 30, 2024

  1. Merge branch 'main' into doc-reorg

    @jsiirola
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  2. Move in_testing_environment, FlagType, NOTSET to common.flags

    @jsiirola
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  3. Standardize use of in_testing_environment(), building_documentation()

    @jsiirola
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  4. NFC: comments and black

    @jsiirola
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  5. Allow detecting documentation regardless of testing

    @jsiirola
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  6. NFC: typo

    @jsiirola
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  7. Update URL checker

    @jsiirola
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  8. Update URL checker

    @jsiirola
    jsiirola committed Aug 30, 2024
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  9. Rework RTD URL to work with the url checker

    @jsiirola
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Commits on Aug 31, 2024

  1. Stub in the auto-generated library reference

    @jsiirola
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  2. Move the API docs to the root; rename old Library Reference -> Topical

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Commits on Sep 13, 2024

  1. Merge branch 'main' into doc-reorg

    @jsiirola
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  2. Merge branch 'doc-reorg' into doc-index

    @jsiirola
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Commits on Sep 16, 2024

  1. Add citation to balas.py 

    Adding citation to original Balas work on hypercube cuts as core reference for no-good cuts methodology
    @viens-code
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  2. Add abs_opt_gap example to alternative_solutions documentation 

    Added a knapsack example showing how to use abs_opt_gap to restrict what solutions are returned to the user based on optimality gaps
    @viens-code
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  3. Update balas.py to fix black issue

    @viens-code
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  4. Balas.py Black issue fix

    @viens-code
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  5. Update balas.py to fix spelling error

    @viens-code
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Commits on Sep 23, 2024

  1. Removing redundant pynumero, common API documentation

    @jsiirola
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  2. Update rst docs to not duplicate API docs (add :noindex: or use summa… 

    …ry only)
    @jsiirola
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Commits on Sep 30, 2024

  1. Simplify toctree entries in library reference

    @jsiirola
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Commits on Oct 1, 2024

  1. make clean: remove autogenerated API files

    @jsiirola
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  2. Update references to BiBTeX 'alpha' format

    @jsiirola
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  3. Update __init__.py to remove absolute pyomo imports

    @jsiirola
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  4. General cleanup of doc files

    @jsiirola
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  5. re-adding working with abstrct models sections [inadvertantly removed]

    @jsiirola
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  6. Fix incorrect class references

    @jsiirola
    jsiirola committed Oct 1, 2024
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  7. Remove autosectionlabel, update references

    @jsiirola
    jsiirola committed Oct 1, 2024
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  8. General update of documentation formatting

    @jsiirola
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  9. Clean up docstrings, silence Sphinx warnings and errors

    @jsiirola
    jsiirola committed Oct 1, 2024
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  10. Switch to using ply decorators to not confuse Sphinx

    @jsiirola
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Commits on Oct 3, 2024

  1. Rework building_documentation() logic to improve Sphinx output/suppre… 

    …ss warnings
    @jsiirola
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  2. Avoid importing Qt when building documentation to suppress Sphine API… 

    … autodoc warnings
    @jsiirola
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  3. Update the deprecation decorators to avoid doc warnings 

    (This normalizes the doc strings to avoid indention warnings from Sphinx)
    @jsiirola
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  4. Wrap enum.IntEnum to resolve warnings from Sphinx autodoc

    @jsiirola
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  5. Clean up some imports

    @jsiirola
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  6. Output str instead of repr for Config default values

    @jsiirola
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  7. Add blank line to help resolve Sphinx autodoc warnings

    @jsiirola
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  8. Update TestCase documentation & resolve some Sphinx warnings

    @jsiirola
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  9. Suppress warning for (intentionally) unindexed RST file

    @jsiirola
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  10. Remove unused intersphinx link

    @jsiirola
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  11. Update copyright statement to match the rest of Pyomo

    @jsiirola
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  12. Update Sphinx config to improve API rendering

    @jsiirola
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  13. Fixing typos

    @jsiirola
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  14. Deprecate/Remove unneeded references to results data structures from … 

    …__init__.py
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Commits on Oct 4, 2024

  1. Merge branch 'main' into doc-reorg

    @jsiirola
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  2. Merge branch 'doc-reorg' into doc-index

    @jsiirola
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  3. Update EOL handling in ConfigDict to remove extra EOL, update tests

    @jsiirola
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  4. Track changes in repr(FlagType)

    @jsiirola
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  5. NFC: apply black

    @jsiirola
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Commits on Oct 7, 2024

  1. Import relevant module for doctests of classes/functions

    @jsiirola
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  2. Don't document inherited-members for ndarray derived classes

    @jsiirola
    jsiirola committed Oct 7, 2024
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  3. Exclude all 'tests' when building source documentation

    @jsiirola
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  4. Allow interior_point ex1.py to be imported without executing

    @jsiirola
    jsiirola committed Oct 7, 2024
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  5. Remove unused import

    @jsiirola
    jsiirola committed Oct 7, 2024
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  6. Fix doc example typo

    @jsiirola
    jsiirola committed Oct 7, 2024
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Commits on Oct 8, 2024

  1. Improve the error message from ImmutableConfigValue

    @jsiirola
    jsiirola committed Oct 8, 2024
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  2. Add support for setting the state of building_documentation()

    @jsiirola
    jsiirola committed Oct 8, 2024
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  3. Check state of logger module attribute before dereferencing 

    This avoids exceptions if the interpreter shuts down with open tempfile
contexts.
    @jsiirola
    jsiirola committed Oct 8, 2024
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  4. Resolve errors in docstrings

    @jsiirola
    jsiirola committed Oct 8, 2024
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  5. Use try-finally pattern in the context manager (from decorator docume… 

    …ntation)
    @jsiirola
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  6. Emit log messages to Pyomo logger when building documentation 

    This resolves doctest failures
    @jsiirola
    jsiirola committed Oct 8, 2024
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  7. Update sphinx configuration

    @jsiirola
    jsiirola committed Oct 8, 2024
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  8. Clean up Reference TOC appearance

    @jsiirola
    jsiirola committed Oct 8, 2024
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  9. Fix docstring error

    @jsiirola
    jsiirola committed Oct 8, 2024
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  10. Simplify logic for erstoring log handlers

    @jsiirola
    jsiirola committed Oct 8, 2024
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  11. Remove unused sphinx extensions

    @jsiirola
    jsiirola committed Oct 8, 2024
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  12. Fixing doc typos

    @jsiirola
    jsiirola committed Oct 8, 2024
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  13. Remove use of relative imports

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  14. NFC: apply black

    @jsiirola
    jsiirola committed Oct 8, 2024
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  15. Merge branch 'main' into doc-reorg

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  16. Merge branch 'doc-reorg' into doc-index

    @jsiirola
    jsiirola committed Oct 8, 2024
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  17. Standardizing references

    @jsiirola
    jsiirola committed Oct 8, 2024
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  18. Documenting reference standard

    @jsiirola
    jsiirola committed Oct 8, 2024
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  19. Updating reference

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  20. remove references to the global logger

    @jsiirola
    jsiirola committed Oct 8, 2024
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  21. Fix 'tests' exclusion pattern

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Commits on Oct 9, 2024

  1. Explicitly set the default numpy print precision

    @jsiirola
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  2. Update doctest test file exclusion

    @jsiirola
    jsiirola committed Oct 9, 2024
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Commits on Oct 10, 2024

  1. Update tests filter for Sphinx>=8

    @jsiirola
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  2. Minor (NFC) reorder of doctest_global_setup

    @jsiirola
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  3. Make TempfileContext more robust when deleted during Python shutdown

    @jsiirola
    jsiirola committed Oct 10, 2024
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  4. Resolve Sphinx errors; update comment to match current practice

    @jsiirola
    jsiirola committed Oct 10, 2024
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  5. Edit MIS test to not run on module import

    @jsiirola
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  6. Silence Sphinx warnings

    @jsiirola
    jsiirola committed Oct 10, 2024
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  7. NFC: typo

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  8. Move pint import to common.dependencies; update for Python 3.13 + pin… 

    …t<=0.24.3
    @jsiirola
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  9. Revert previous commit to Archive/conf.py; apply to current OnlineDoc… 

    …s/conf.py
    @jsiirola
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  10. Do not trigger DeferredImportError exceptions when attempting to seri… 

    …alize objects
    @jsiirola
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  11. Update doctests for OSX, Numpy changes

    @jsiirola
    jsiirola committed Oct 10, 2024
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  12. Remove debugging

    @jsiirola
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  13. Add (hidden) documentation of the NumPy2 output

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Commits on Oct 11, 2024

  1. Fix indentation typo

    @jsiirola
    jsiirola committed Oct 11, 2024
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  2. Clean up makefile

    @jsiirola
    jsiirola committed Oct 11, 2024
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  3. Restore (and update) doc README

    @jsiirola
    jsiirola committed Oct 11, 2024
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  4. update baseline to match python 3.13 behavior

    @jsiirola
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  5. Merge pull request Pyomo#3378 from jsiirola/doc-index 

    Autogenerate API documentation
    @jsiirola
    jsiirola authored Oct 11, 2024
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  6. Remove doc/Archive directory

    @jsiirola
    jsiirola committed Oct 11, 2024
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  7. Update readme with relevant hashes

    @jsiirola
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  8. Update readme with relevant hashes; reformet

    @jsiirola
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  9. simplify makefile

    @jsiirola
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  10. Merge remote-tracking branch 'refs/remotes/origin/doc-reorg' into doc… 

    …-reorg
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  11. NFC: fix typos

    @jsiirola
    jsiirola committed Oct 11, 2024
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  12. Merge branch 'doc-reorg' into viens-main

    @jsiirola
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  13. Fixing formatting

    @jsiirola
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  14. Remove debugging

    @jsiirola
    jsiirola committed Oct 11, 2024
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  15. Resolve typos

    @jsiirola
    jsiirola committed Oct 11, 2024
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  16. Consolidate references

    @jsiirola
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  17. Standardize references

    @jsiirola
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  18. Merge branch 'main' into doc-reorg

    @jsiirola
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  19. Show solutions in example

    @jsiirola
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  20. Expand initial introduction (slightly)

    @jsiirola
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  21. Defer the pytest import

    @jsiirola
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  22. Move tests into a /tests/ directory

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Commits on Oct 12, 2024

  1. bugfix: pytest import

    @jsiirola
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  2. Move kernel examples into OnlineDocs/src

    @jsiirola
    jsiirola committed Oct 12, 2024
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  3. Update ptah to GDP examples

    @jsiirola
    jsiirola committed Oct 12, 2024
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Commits on Oct 14, 2024

  1. Remove call to show() from visualize_model_graph()

    @jsiirola
    jsiirola committed Oct 14, 2024
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  2. Ensure in_testing_environment and matplottlib are resolved earlier in… 

    … doctest
    @jsiirola
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  3. Merge branch 'doc-reorg' into main

    @jsiirola
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Commits on Oct 15, 2024

  1. Merge branch 'main' into doc-reorg

    @jsiirola
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  2. Fixing typo in alternative_solutions.rst

    @blnicho
    blnicho authored Oct 15, 2024
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  3. Merge pull request Pyomo#3370 from viens-code/main 

    Alternative Solutions documentation add
    @blnicho
    blnicho authored Oct 15, 2024
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  4. NFC: fix doc typo

    @jsiirola
    jsiirola committed Oct 15, 2024
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Commits on Oct 17, 2024

  1. Improve identification of base loader in the DeferredImportCallbackFi… 

    …nder
    @jsiirola
    jsiirola committed Oct 17, 2024
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  2. Add moved_module() utility for handled moved / renamed modules

    @jsiirola
    jsiirola committed Oct 17, 2024
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  3. Add tests for moved_module

    @jsiirola
    jsiirola committed Oct 17, 2024
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  4. Simplify imports

    @jsiirola
    jsiirola committed Oct 17, 2024
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  5. Deprecate relocated_module()

    @jsiirola
    jsiirola committed Oct 17, 2024
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  6. Remove use of removed_module in Pyomo

    @jsiirola
    jsiirola committed Oct 17, 2024
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  7. NFC: fix typo

    @jsiirola
    jsiirola committed Oct 17, 2024
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  8. Add testing file

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    jsiirola committed Oct 17, 2024
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Commits on Oct 18, 2024

  1. Remove pysp stub module

    @jsiirola
    jsiirola committed Oct 18, 2024
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  2. Implement pyomo.__future__ using pyomo/future.py 

    This prevents conflicts with the main Python __future__ when the CWD is pyomo/pyomo
    @jsiirola
    jsiirola committed Oct 18, 2024
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  3. Remove stubs for deprecated modules from the codebase

    @jsiirola
    jsiirola committed Oct 18, 2024
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  4. Update import of CyIpoptProblemInterface

    @jsiirola
    jsiirola committed Oct 18, 2024
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  5. NFC: apply black

    @jsiirola
    jsiirola committed Oct 18, 2024
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  6. Add missing __init__.py file

    @jsiirola
    jsiirola committed Oct 18, 2024
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