Full rebuild

.zenodo.json

@@ -28,7 +28,7 @@
     }
   ],
   "notes": "The initial development was financed through the project 'Modelling quartz luminescence signal dynamics relevant for dating and dosimetry' (DFG SCHM 305114-1)",
-  "version": "0.2.9.9000-4",
+  "version": "0.2.9",
   "upload_type": "software",
   "keywords": ["Luminescence dating", "Modelling", "Energy-band diagrams", "Quartz models"],
   "publication_date": "2021-11-08",

DESCRIPTION

@@ -1,7 +1,7 @@
 Package: RLumModel
 Type: Package
 Title: Solving Ordinary Differential Equations to Understand Luminescence
-Version: 0.2.9.9000-4
+Version: 0.2.9
 Date: 2021-11-08
 Author: Johannes Friedrich [aut, trl, cre] (<https://orcid.org/0000-0002-0805-9547>),
     Sebastian Kreutzer [aut, ths] (<https://orcid.org/0000-0002-0734-2199>),

NEWS.md

@@ -7,10 +7,12 @@
 
 # NEWS for the R Package RLumModel
 
-## Changes in version 0.2.9.9000-4 (2021-11-08)
+## Changes in version 0.2.9 (November 08, 2021)
 
 -   Export internal function `.set_pars()`
 
+------------------------------------------------------------------------
+
 ## Changes in version 0.2.8 (April 08, 2021)
 
 -   This version requires R \> 3.6.0

RLumModel.BuildResults/RLumModel_0.2.9.9000-4-Functions.csv → RLumModel.BuildResults/RLumModel_0.2.9-Functions.csv

@@ -1,12 +1,12 @@
 "Name","Title","Description","Version","m.Date","m.Time","Author","Citation"
 ".set_pars","Set parameters for Different Quartz Luminescence Models","This function provides all necessary model parameters to the calculation of the ODEs.","0.1.3
-",NA,NA,"Johannes Friedrich, University of Bayreuth (Germany),<br />","Friedrich, J., 2021. .set_pars(): Set parameters for Different Quartz Luminescence Models. Function version 0.1.3. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+",NA,NA,"Johannes Friedrich, University of Bayreuth (Germany),<br />","Friedrich, J., 2021. .set_pars(): Set parameters for Different Quartz Luminescence Models. Function version 0.1.3. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
 "
 "ExampleData.ModelOutput","Example data (TL curve) simulated with parameter set from Pagonis 2007","Example data (TL curve) simulated with parameter set from Pagonis 2007","0.1.1
 ",NA,NA,"Johannes Friedrich, University of Bayreuth (Germany)<br />",NA
 "model_LuminescenceSignals","Model Luminescence Signals","This function models luminescence signals for quartz based on published physical models. It is possible to simulate TL, (CW-) OSL, RF measurements in a arbitrary sequence. This sequence is definded as a  list  of certain abrivations. Furthermore it is possible to load a sequence direct from the Riso Sequence Editor. The output is an  RLum.Analysis object and so the plots are done by the  plot_RLum.Analysis  function. If a SAR sequence is simulated the plot output can be disabled and SAR analyse functions can be used.","0.1.5
-",NA,NA,"Johannes Friedrich, University of Bayreuth (Germany),<br /> Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)<br />","Friedrich, J., Kreutzer, S., 2021. model_LuminescenceSignals(): Model Luminescence Signals. Function version 0.1.5. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+",NA,NA,"Johannes Friedrich, University of Bayreuth (Germany),<br /> Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)<br />","Friedrich, J., Kreutzer, S., 2021. model_LuminescenceSignals(): Model Luminescence Signals. Function version 0.1.5. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
 "
 "read_SEQ2R","Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence","A SEQ-file created by the Risoe Sequence Editor can be imported to simulate the sequence written in the sequence editor.","0.1.0
-",NA,NA,"Johannes Friedrich, University of Bayreuth (Germany),<br />","Friedrich, J., 2021. read_SEQ2R(): Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence. Function version 0.1.0. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+",NA,NA,"Johannes Friedrich, University of Bayreuth (Germany),<br />","Friedrich, J., 2021. read_SEQ2R(): Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence. Function version 0.1.0. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
 "

RLumModel.BuildResults/RLumModel_0.2.9.9000-4-Functions.html → RLumModel.BuildResults/RLumModel_0.2.9-Functions.html

@@ -1,6 +1,6 @@
 
 <p class='character'><h2 align="center">Major functions in the R package 'Luminescence'</h2>
-           <h4 align="center"> [version: 0.2.9.9000-4 ]</h4>
+           <h4 align="center"> [version: 0.2.9 ]</h4>
            <style type="text/css">
            <!--
 
@@ -71,7 +71,7 @@ <h4 align="center"> [version: 0.2.9.9000-4 ]</h4>
 </td>
 <td class=cellinside>Johannes Friedrich, University of Bayreuth (Germany),<br />
 </td>
-<td class=cellinside>Friedrich, J., 2021. .set_pars(): Set parameters for Different Quartz Luminescence Models. Function version 0.1.3. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+<td class=cellinside>Friedrich, J., 2021. .set_pars(): Set parameters for Different Quartz Luminescence Models. Function version 0.1.3. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
 
 </td></tr>
 
@@ -114,7 +114,7 @@ <h4 align="center"> [version: 0.2.9.9000-4 ]</h4>
 </td>
 <td class=cellinside>Johannes Friedrich, University of Bayreuth (Germany),<br /> Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)<br />
 </td>
-<td class=cellinside>Friedrich, J., Kreutzer, S., 2021. model_LuminescenceSignals(): Model Luminescence Signals. Function version 0.1.5. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+<td class=cellinside>Friedrich, J., Kreutzer, S., 2021. model_LuminescenceSignals(): Model Luminescence Signals. Function version 0.1.5. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
 
 </td></tr>
 
@@ -136,7 +136,7 @@ <h4 align="center"> [version: 0.2.9.9000-4 ]</h4>
 </td>
 <td class=cellinside>Johannes Friedrich, University of Bayreuth (Germany),<br />
 </td>
-<td class=cellinside>Friedrich, J., 2021. read_SEQ2R(): Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence. Function version 0.1.0. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+<td class=cellinside>Friedrich, J., 2021. read_SEQ2R(): Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence. Function version 0.1.0. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
 
 </td></tr>
 
@@ -146,7 +146,7 @@ <h4 align="center"> [version: 0.2.9.9000-4 ]</h4>
  <br>
 
 <p class='character'><h2 align="center">Major functions in the R package 'Luminescence'</h2>
-           <h4 align="center"> [version: 0.2.9.9000-4 ]</h4>
+           <h4 align="center"> [version: 0.2.9 ]</h4>
            <style type="text/css">
            <!--
 
@@ -217,7 +217,7 @@ <h4 align="center"> [version: 0.2.9.9000-4 ]</h4>
 </td>
 <td class=cellinside>Johannes Friedrich, University of Bayreuth (Germany),<br />
 </td>
-<td class=cellinside>Friedrich, J., 2021. .set_pars(): Set parameters for Different Quartz Luminescence Models. Function version 0.1.3. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+<td class=cellinside>Friedrich, J., 2021. .set_pars(): Set parameters for Different Quartz Luminescence Models. Function version 0.1.3. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
 
 </td></tr>
 
@@ -260,7 +260,7 @@ <h4 align="center"> [version: 0.2.9.9000-4 ]</h4>
 </td>
 <td class=cellinside>Johannes Friedrich, University of Bayreuth (Germany),<br /> Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)<br />
 </td>
-<td class=cellinside>Friedrich, J., Kreutzer, S., 2021. model_LuminescenceSignals(): Model Luminescence Signals. Function version 0.1.5. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+<td class=cellinside>Friedrich, J., Kreutzer, S., 2021. model_LuminescenceSignals(): Model Luminescence Signals. Function version 0.1.5. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
 
 </td></tr>
 
@@ -282,7 +282,7 @@ <h4 align="center"> [version: 0.2.9.9000-4 ]</h4>
 </td>
 <td class=cellinside>Johannes Friedrich, University of Bayreuth (Germany),<br />
 </td>
-<td class=cellinside>Friedrich, J., 2021. read_SEQ2R(): Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence. Function version 0.1.0. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+<td class=cellinside>Friedrich, J., 2021. read_SEQ2R(): Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence. Function version 0.1.0. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
 
 </td></tr>
 

RLumModel.BuildResults/RLumModel_0.2.9.9000-4-Functions.tex → RLumModel.BuildResults/RLumModel_0.2.9-Functions.tex

@@ -5,15 +5,15 @@
  & Name & Title & Description & Version & m.Date & m.Time & Author & Citation \\ 
   \hline
 1 & .set\_pars & Set parameters for Different Quartz Luminescence Models & This function provides all necessary model parameters to the calculation of the ODEs. & 0.1.3
- &  &  & Johannes Friedrich, University of Bayreuth (Germany),$<$br /$>$ & Friedrich, J., 2021. .set\_pars(): Set parameters for Different Quartz Luminescence Models. Function version 0.1.3. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+ &  &  & Johannes Friedrich, University of Bayreuth (Germany),$<$br /$>$ & Friedrich, J., 2021. .set\_pars(): Set parameters for Different Quartz Luminescence Models. Function version 0.1.3. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
  \\ 
   2 & ExampleData.ModelOutput & Example data (TL curve) simulated with parameter set from Pagonis 2007 & Example data (TL curve) simulated with parameter set from Pagonis 2007 & 0.1.1
  &  &  & Johannes Friedrich, University of Bayreuth (Germany)$<$br /$>$ &  \\ 
   3 & model\_LuminescenceSignals & Model Luminescence Signals & This function models luminescence signals for quartz based on published physical models. It is possible to simulate TL, (CW-) OSL, RF measurements in a arbitrary sequence. This sequence is definded as a  list  of certain abrivations. Furthermore it is possible to load a sequence direct from the Riso Sequence Editor. The output is an  RLum.Analysis object and so the plots are done by the  plot\_RLum.Analysis  function. If a SAR sequence is simulated the plot output can be disabled and SAR analyse functions can be used. & 0.1.5
- &  &  & Johannes Friedrich, University of Bayreuth (Germany),$<$br /$>$ Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)$<$br /$>$ & Friedrich, J., Kreutzer, S., 2021. model\_LuminescenceSignals(): Model Luminescence Signals. Function version 0.1.5. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+ &  &  & Johannes Friedrich, University of Bayreuth (Germany),$<$br /$>$ Sebastian Kreutzer, IRAMAT-CRP2A, Universite Bordeaux Montaigne (France)$<$br /$>$ & Friedrich, J., Kreutzer, S., 2021. model\_LuminescenceSignals(): Model Luminescence Signals. Function version 0.1.5. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
  \\ 
   4 & read\_SEQ2R & Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence & A SEQ-file created by the Risoe Sequence Editor can be imported to simulate the sequence written in the sequence editor. & 0.1.0
- &  &  & Johannes Friedrich, University of Bayreuth (Germany),$<$br /$>$ & Friedrich, J., 2021. read\_SEQ2R(): Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence. Function version 0.1.0. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9.9000-4. https://CRAN.R-project.org/package=RLumModel
+ &  &  & Johannes Friedrich, University of Bayreuth (Germany),$<$br /$>$ & Friedrich, J., 2021. read\_SEQ2R(): Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence. Function version 0.1.0. In: Friedrich, J., Kreutzer, S., Schmidt, C., 2021. RLumModel: Solving Ordinary Differential Equations to Understand Luminescence. R package version 0.2.9. https://CRAN.R-project.org/package=RLumModel
  \\ 
    \hline
 \end{tabular}