Database name was missing from temp table creation #203
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| # Thid workflow will build and push the import pipeline container. | |
| # the plan later will be to include unit tests as well | |
| name: Building Pipeline Containers | |
| on: | |
| push: | |
| branches: | |
| - 'dev' | |
| - 'python-update' | |
| jobs: | |
| starting-notification: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Intital notification | |
| uses: rtCamp/action-slack-notify@v2 | |
| env: | |
| SLACK_MESSAGE: 'Creating new pipeline image in docker hub' | |
| SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }} | |
| MSG_MINIMAL: true | |
| create-docker-image: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: docker login | |
| env: | |
| DOCKER_USER: ${{ secrets.DOCKER_USER }} | |
| DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} | |
| run: docker login -u $DOCKER_USER -p $DOCKER_PASSWORD | |
| - name: docker build | |
| run: docker build -f Dockerfile -t rnacentral/rnacentral-import-pipeline:latest . | |
| - name: docker push | |
| run: docker push rnacentral/rnacentral-import-pipeline:latest | |
| finished-notification: | |
| needs: | |
| - create-docker-image | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Finished notification | |
| uses: rtCamp/action-slack-notify@v2 | |
| env: | |
| SLACK_MESSAGE: 'New pipeline image pushed to docker hub' | |
| SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }} | |
| MSG_MINIMAL: true | |
| singularity-conversion: | |
| needs: | |
| - create-docker-image | |
| uses: rnacentral/rnacentral-import-pipeline/.github/workflows/singularity.yaml@dev | |
| secrets: inherit | |
| finished-singularity: | |
| needs: | |
| - singularity-conversion | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Finished notification | |
| uses: rtCamp/action-slack-notify@v2 | |
| env: | |
| SLACK_MESSAGE: 'New singularity image pushed to ghcr' | |
| SLACK_WEBHOOK: ${{ secrets.SLACK_WEBHOOK }} | |
| MSG_MINIMAL: true |