Escapes for awk variables

RNAcentral · Sep 1, 2023 · 1f585e2 · 1f585e2
1 parent 0da0f10
commit 1f585e2
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/databases/rediportal.nf b/workflows/databases/rediportal.nf
@@ -23,7 +23,7 @@ process fetch_rediportal_bedfile {
 
   """
   wget -O REDI_sorted_untabbed.bed $params.databases.rediportal.bed_remote
-  awk 'BEGIN {OFS="\t"} {print $1,$2,$3,$4,$5,$6,$7}' REDI_sorted_untabbed.bed > REDI_sorted.bed
+  awk 'BEGIN {OFS="\t"} {print \$1,\$2,\$3,\$4,\$5,\$6,\$7} ' REDI_sorted_untabbed.bed > REDI_sorted.bed
   """
 }