Extract the BCRP3 gene from LNCipedia

RNAcentral · Dec 13, 2023 · ba27977 · ba27977
1 parent c78923e
commit ba27977
Showing 1 changed file with 16 additions and 0 deletions.
diff --git a/workflows/litscan/queries/lncipedia.sql b/workflows/litscan/queries/lncipedia.sql
@@ -0,0 +1,16 @@
+-- LNCipedia (Extract BCRP3 gene)
+select
+    upi,
+    taxid,
+    gene,
+    gene_synonym -- Split on ,
+from xref x
+join rnc_accessions ra 
+on 
+	ra.accession = x.ac 
+where
+	x.deleted = 'N'
+	and ra."database" = 'LNCIPEDIA'
+	and (ra."gene" = 'lnc-GGT1-7' or ra."gene" = 'lnc-GGT1-16')
+	and ra."gene_synonym" != ''
+;