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@SD2E

Synergistic Discovery and Design

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  1. SYNBICT SYNBICT Public

    Synthetic Biology Curation Tools

    Python 6 2

  2. sbol-dictionary-maintainer sbol-dictionary-maintainer Public

    Synchronize lists of key reagents, constructs, strains, etc. between a Google Sheets dictionary and SynBioHub

    Java 5 3

  3. opil opil Public

    The Open Protocol Interface Language (OPIL) is intended as a standard language for protocol interfaces

    Python 5 1

  4. experimental-intent-parser experimental-intent-parser Public

    A tool that combines a word-processing interface with structured tables and assisted linking to definitions to provide a simple interface for incremental codification of experiment designs.

    Python 4

  5. reactors-etl reactors-etl Public

    Source code and test material for developing ETL components for use in SD2E

    Shell 3 3

  6. api-user-guide api-user-guide Public archive

    Docs for SD2E core platform and additional integrated web service APIs

    Ruby 3 2

Repositories

Showing 10 of 82 repositories
  • test-harness Public

    GitHub mirror of https://gitlab.sd2e.org/sd2program/test-harness

    SD2E/test-harness’s past year of commit activity
    Python 0 1 0 0 Updated Feb 19, 2024
  • experimental-intent-parser Public

    A tool that combines a word-processing interface with structured tables and assisted linking to definitions to provide a simple interface for incremental codification of experiment designs.

    SD2E/experimental-intent-parser’s past year of commit activity
    Python 4 BSD-3-Clause 0 52 1 Updated May 1, 2023
  • xplan Public
    SD2E/xplan’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Oct 26, 2022
  • pysd2cat Public

    Python SD2 Circuit Analysis Tool

    SD2E/pysd2cat’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated May 27, 2022
  • performance-metrics Public
    SD2E/performance-metrics’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 25, 2022
  • precomputed-data-table Public
    SD2E/precomputed-data-table’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated May 24, 2022
  • diagnose Public
    SD2E/diagnose’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 22, 2022
  • rna-seq-pipeline Public

    This is the automated RNA-seq processing pipeline used by the SD2 program

    SD2E/rna-seq-pipeline’s past year of commit activity
    Python 0 1 0 0 Updated Mar 24, 2022
  • python-datacatalog Public

    (Mirror) Python package containing core business logic and helper utilities for Data Catalog

    SD2E/python-datacatalog’s past year of commit activity
    Python 0 0 0 0 Updated Dec 1, 2021
  • omics_tools Public

    Mirror of SD2E omics_tools

    SD2E/omics_tools’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Nov 17, 2021
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