Merge pull request #1201 from SPAAM-community/Susat2024

Susat2024
SPAAM-community · Dec 11, 2024 · 4d64db4 · 4d64db4
2 parents e1a856f + 43a1e63
commit 4d64db4
Show file tree

Hide file tree

Showing 3 changed files with 10 additions and 1 deletion.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -13,11 +13,13 @@ and this project follows to [Calendar Versioning](https://calver.org/).
 
 #### Ancient Single Genome: Host Associated
 
+- Susat 2024 10.1038/s42003-024-06676-7 (added by @MagdalenaHC)
+
 #### Ancient Metagenome: Environmental
 
 ### Changed
 
--  Bonczarowska2023: Fixed library type (actually half-UDG, despite paper reporting non-UDG) 10.1098/rspb.2023.0622 (fixed by @marcel-keller)
+- Bonczarowska2023: Fixed library type (actually half-UDG, despite paper reporting non-UDG) 10.1098/rspb.2023.0622 (fixed by @marcel-keller)
 
 ### Removed
 

diff --git a/...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv b/...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv
@@ -3111,3 +3111,8 @@ White2021	2021	10.3390/biology10121324	B2_B6	ENA	PRJEB49091	ERS9769382	L024	doub
 White2021	2021	10.3390/biology10121324	B2_B6	ENA	PRJEB49091	ERS9769382	L024-B	double	AmpliTaq Gold DNA	none	Illumina HiSeq 4000	PAIRED	WGS	108865268	ERR13663675	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/075/ERR13663675/ERR13663675_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/075/ERR13663675/ERR13663675_2.fastq.gz	9f698e07345a859feb34cb4e99a55d11;d7d70554b02c6f5dc7952fd2485c163c	2589844121;2788114713
 White2021	2021	10.3390/biology10121324	B2_B7	ENA	PRJEB49091	ERS9769383	L025-B	double	AmpliTaq Gold DNA	none	Illumina HiSeq 4000	PAIRED	WGS	81293780	ERR13663677	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/077/ERR13663677/ERR13663677_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/077/ERR13663677/ERR13663677_2.fastq.gz	00eb8d335bfedd6a0569e708bb5be5f8;3b34fc20b2c7a012ce5d25d177d55dc8	2074741912;2130629421
 White2021	2021	10.3390/biology10121324	B2_B7	ENA	PRJEB49091	ERS9769383	L025	double	AmpliTaq Gold DNA	none	Illumina HiSeq 4000	PAIRED	WGS	179780446	ERR13663678	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/078/ERR13663678/ERR13663678_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR136/078/ERR13663678/ERR13663678_2.fastq.gz	47149ec413c0a14645b7a838fc088507;1372803ee3d494b1876b82982c69d10c	4575913200;4879999751
+Susat2024	2024	10.1038/s42003-024-06676-7	Warburg_1	ENA	PRJEB49648	ERS19529513	KH201292	double	AccuPrime Pfx DNA	half-udg	Illumina NovaSeq 6000	SINGLE	WGS	407857327	ERR13081220	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR130/020/ERR13081220/ERR13081220.fastq.gz	5175e567917874e58afc0ba7d0842df2	10971181148
+Susat2024	2024	10.1038/s42003-024-06676-7	Warburg_2	ENA	PRJEB49648	ERS19529514	KH200218_1	double	AccuPrime Pfx DNA	half-udg	Illumina NovaSeq 6000	SINGLE	WGS	825408927	ERR13081216	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR130/016/ERR13081216/ERR13081216.fastq.gz	6cc72b1013107335a732b1de3c42315b	32378107839
+Susat2024	2024	10.1038/s42003-024-06676-7	Warburg_2	ENA	PRJEB49648	ERS19529514	KH200218_2	double	AccuPrime Pfx DNA	half-udg	Illumina NovaSeq 6000	SINGLE	WGS	779197269	ERR13081217	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR130/017/ERR13081217/ERR13081217.fastq.gz	e3716b3fcc0dc508355bac4066e98440	30780770975
+Susat2024	2024	10.1038/s42003-024-06676-7	Warburg_2	ENA	PRJEB49648	ERS19529514	KH200218_3	double	AccuPrime Pfx DNA	half-udg	Illumina NovaSeq 6000	SINGLE	WGS	331237067	ERR13081218	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR130/018/ERR13081218/ERR13081218.fastq.gz	859d36af02ca9bc64a77a6198d647339	13693431199
+Susat2024	2024	10.1038/s42003-024-06676-7	Warburg_2	ENA	PRJEB49648	ERS19529514	KH200218_4	double	AccuPrime Pfx DNA	half-udg	Illumina NovaSeq 6000	SINGLE	WGS	264407276	ERR13081219	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/ERR130/019/ERR13081219/ERR13081219.fastq.gz	e24316d796fcb34c2594f4aef1dc1a85	10868287934
diff --git a/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv b/ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
@@ -717,3 +717,5 @@ White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B3
 White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B5	Homo sapiens	200	10.3390/biology10121324	bacteria	Porphyromonas gingivalis	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769381
 White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B6	Homo sapiens	200	10.3390/biology10121324	bacteria	Porphyromonas gingivalis	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769382
 White2021	2021	10.3390/biology10121324	Kuygenzhar	51.103	71.720	Kazakhstan	B2_B7	Homo sapiens	200	10.3390/biology10121324	bacteria	Porphyromonas gingivalis	tooth	chromosome	ENA	raw	PRJEB49091	ERS9769383
+Susat2024	2024	10.1038/s42003-024-06676-7	Warburg	51.488	9.133	Germany	Warburg_1	Homo sapiens	5200	10.1038/s42003-024-06676-7	bacteria	Yersinia pestis	tooth	chromosome	ENA	raw	PRJEB49648	ERS19529513
+Susat2024	2024	10.1038/s42003-024-06676-7	Warburg	51.488	9.133	Germany	Warburg_2	Homo sapiens	5100	10.1038/s42003-024-06676-7	bacteria	Yersinia pestis	tooth	chromosome	ENA	raw	PRJEB49648	ERS19529514