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Merge pull request #1209 from marcel-keller/corr_bonczarowska2023
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Corr bonczarowska2023
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@jfy133
jfy133 authored Dec 11, 2024
2 parents 681cd15 + fa5f8d1 commit fb1aea1
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -17,6 +17,8 @@ and this project follows to [Calendar Versioning](https://calver.org/).

### Changed

- Bonczarowska2023: Fixed library type (actually half-UDG, despite paper reporting non-UDG) 10.1098/rspb.2023.0622 (fixed by @marcel-keller)

### Removed

## v24.09: Medieval Town of Toruń
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10 changes: 5 additions & 5 deletions ...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv
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Expand Up @@ -2817,11 +2817,11 @@ Neumann2023 2023 10.1553/archaeologia107 DSH025 ENA PRJEB61070 ERS15547238 DSH02
Neumann2023 2023 10.1553/archaeologia107 DSH008 ENA PRJEB61070 ERS15547237 DSH008.A0201.YP1.1 single AccuPrime Pfx DNA half-udg Illumina HiSeq 4000 SINGLE Targeted-Capture 6850253 ERR11479452 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/052/ERR11479452/ERR11479452.fastq.gz 869fdf1366e7bceba885863135667f7d 205976513
Neumann2023 2023 10.1553/archaeologia107 DSH008 ENA PRJEB61070 ERS15547235 DSH008.A0101.SG1.1 single AccuPrime Pfx DNA none Illumina HiSeq 4000 SINGLE WGS 3973592 ERR11479449 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/049/ERR11479449/ERR11479449.fastq.gz 6cf53899d806b5373b9846c9cffbebc7 124500605
Neumann2023 2023 10.1553/archaeologia107 DSH025 ENA PRJEB61070 ERS15547236 DSH025.A0101.SG1.1 single AccuPrime Pfx DNA none Illumina HiSeq 4000 SINGLE WGS 4901176 ERR11479450 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/050/ERR11479450/ERR11479450.fastq.gz 999057c65a6ca3edeef32cbb714645ab 143481817
Bonczarowska2023 2023 10.1098/rspb.2023.0622 X52 ENA PRJEB60595 ERS14773586 X52T double PfuTurbo Cx Hotstart DNA none Illumina NovaSeq 6000 PAIRED WGS 1292846992 ERR11478695 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/095/ERR11478695/ERR11478695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/095/ERR11478695/ERR11478695_2.fastq.gz f253781a551cdf2415c9381715a3bcee;a392e90f10a7b28677870ece699773f5 29915422152;31546072181
Bonczarowska2023 2023 10.1098/rspb.2023.0622 X3003 ENA PRJEB60595 ERS14773585 X3003T double PfuTurbo Cx Hotstart DNA none Illumina NovaSeq 6000 PAIRED WGS 20632842 ERR11011327 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/027/ERR11011327/ERR11011327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/027/ERR11011327/ERR11011327_2.fastq.gz a4a298f0a640223c6ec99d7f3855adc2;6586c9bba9ceda8ab6359fa94980c743 467638929;445341650
Bonczarowska2023 2023 10.1098/rspb.2023.0622 X52 ENA PRJEB60595 ERS14773586 X52T_3 double PfuTurbo Cx Hotstart DNA none Illumina NovaSeq 6000 PAIRED WGS 21145732 ERR11011329 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/029/ERR11011329/ERR11011329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/029/ERR11011329/ERR11011329_2.fastq.gz 7642790292dc433986c6159b2d708b99;d3ca94b15ab06613149b702f45882089 471808218;493240187
Bonczarowska2023 2023 10.1098/rspb.2023.0622 X3003 ENA PRJEB60595 ERS14773585 X3003T_2 double PfuTurbo Cx Hotstart DNA none Illumina NovaSeq 6000 PAIRED WGS 229864836 ERR11011330 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/030/ERR11011330/ERR11011330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/030/ERR11011330/ERR11011330_2.fastq.gz 5937f8e01e4a0c32e0059cd506432f2e;23d59102b0dfb3a5722ec08dc1b5a5cc 4985082432;5107020039
Bonczarowska2023 2023 10.1098/rspb.2023.0622 X52 ENA PRJEB60595 ERS14773586 X52T_2 double PfuTurbo Cx Hotstart DNA none Illumina NovaSeq 6000 PAIRED WGS 1329592756 ERR11435697 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/097/ERR11435697/ERR11435697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/097/ERR11435697/ERR11435697_2.fastq.gz ae96523cb62dbd7cd7c27530039eff97;7617998ef105698c866d6cdedf8710ea 30549343594;29093388600
Bonczarowska2023 2023 10.1098/rspb.2023.0622 X52 ENA PRJEB60595 ERS14773586 X52T double PfuTurbo Cx Hotstart DNA half-udg Illumina NovaSeq 6000 PAIRED WGS 1292846992 ERR11478695 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/095/ERR11478695/ERR11478695_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/095/ERR11478695/ERR11478695_2.fastq.gz f253781a551cdf2415c9381715a3bcee;a392e90f10a7b28677870ece699773f5 29915422152;31546072181
Bonczarowska2023 2023 10.1098/rspb.2023.0622 X3003 ENA PRJEB60595 ERS14773585 X3003T double PfuTurbo Cx Hotstart DNA half-udg Illumina NovaSeq 6000 PAIRED WGS 20632842 ERR11011327 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/027/ERR11011327/ERR11011327_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/027/ERR11011327/ERR11011327_2.fastq.gz a4a298f0a640223c6ec99d7f3855adc2;6586c9bba9ceda8ab6359fa94980c743 467638929;445341650
Bonczarowska2023 2023 10.1098/rspb.2023.0622 X52 ENA PRJEB60595 ERS14773586 X52T_3 double PfuTurbo Cx Hotstart DNA half-udg Illumina NovaSeq 6000 PAIRED WGS 21145732 ERR11011329 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/029/ERR11011329/ERR11011329_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/029/ERR11011329/ERR11011329_2.fastq.gz 7642790292dc433986c6159b2d708b99;d3ca94b15ab06613149b702f45882089 471808218;493240187
Bonczarowska2023 2023 10.1098/rspb.2023.0622 X3003 ENA PRJEB60595 ERS14773585 X3003T_2 double PfuTurbo Cx Hotstart DNA half-udg Illumina NovaSeq 6000 PAIRED WGS 229864836 ERR11011330 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/030/ERR11011330/ERR11011330_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR110/030/ERR11011330/ERR11011330_2.fastq.gz 5937f8e01e4a0c32e0059cd506432f2e;23d59102b0dfb3a5722ec08dc1b5a5cc 4985082432;5107020039
Bonczarowska2023 2023 10.1098/rspb.2023.0622 X52 ENA PRJEB60595 ERS14773586 X52T_2 double PfuTurbo Cx Hotstart DNA half-udg Illumina NovaSeq 6000 PAIRED WGS 1329592756 ERR11435697 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/097/ERR11435697/ERR11435697_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR114/097/ERR11435697/ERR11435697_2.fastq.gz ae96523cb62dbd7cd7c27530039eff97;7617998ef105698c866d6cdedf8710ea 30549343594;29093388600
Parker2023 2023 10.1371/journal.ppat.1011404 KRA004 ENA PRJEB61096 ERS14884856 KRA004.A0101 single AmpliTaq Gold DNA none Illumina HiSeq 4000 PAIRED Targeted-Capture 10220738 ERR11202909 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/009/ERR11202909/ERR11202909_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/009/ERR11202909/ERR11202909_2.fastq.gz dfa4f293ebb5a3665e42cfc1fd3b6813;25c71f69827adf0792e04c90e0a39e0e 186251653;192557211
Parker2023 2023 10.1371/journal.ppat.1011404 KRA004 ENA PRJEB61096 ERS14884856 KRA004.A0101 single AmpliTaq Gold DNA none Illumina HiSeq 4000 PAIRED Targeted-Capture 10278910 ERR11202910 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/010/ERR11202910/ERR11202910_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/010/ERR11202910/ERR11202910_2.fastq.gz 64a0b23736ea265ae7d43f983e684a01;cfc866608423cfdabd08dff49baca0ee 192588589;185849366
Parker2023 2023 10.1371/journal.ppat.1011404 KRA004 ENA PRJEB61096 ERS14884857 KRA004.A0201 single AmpliTaq Gold DNA none Illumina HiSeq 4000 PAIRED Targeted-Capture 9525042 ERR11202911 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/011/ERR11202911/ERR11202911_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/ERR112/011/ERR11202911/ERR11202911_2.fastq.gz d1bd6bae76cafd5dd3ccdefa6cb6a602;66422058317bd7ecc84d03360253e523 172581354;178547024
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