Re-add the environment file #25

	name: CI

	on: [push]

	jobs:
	build:

	strategy:
	matrix:
	python-version: ["3.7", "3.8", "3.10"]

	name: build-linux
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- name: Checkout test data
	uses: actions/checkout@v3
	with:
	repository: LebeerLab/SCARAP-testdata
	path: testdata
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}

	- name: Setup BATS
	uses: mig4/setup-bats@v1
	with:
	bats-version: 1.2.1
	- uses: brokenpip3/[email protected]
	with:
	support-path: ${{ github.workspace }}/test/test_helper/bats-support
	assert-path: ${{ github.workspace }}/test/test_helper/bats-assert

	- name: Add conda to system path
	run: \|
	# $CONDA is an environment variable pointing to the root of the miniconda directory
	echo $CONDA/bin >> $GITHUB_PATH
	- name: Install dependencies
	run: \|
	conda env update --file environment.yml --name base
	- name: Test with bats
	run: \|
	bats -r .

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