ReverseInSoLiTo

API that search tools and retrieve the common articles where these tools have been cited.

Requirements

Python 3.5 or later is needed. The script depends on standard libraries, plus the ones declared in requirements.txt.

• In order to install the dependencies you need pip and venv Python modules.

  • pip is available in many Linux distributions (Ubuntu package python-pip, CentOS EPEL package python-pip), and also as pip Python package.
  • venv is also available in many Linux distributions (Ubuntu package python3-venv). In some of these distributions venv is integrated into the Python 3.5 (or later) installation.

• The creation of a virtual environment and installation of the dependencies in that environment is done running:

python3 -m venv env
source env/bin/activate
pip install --upgrade pip
pip install -r requirements.txt

Download Database

wget https://zenodo.org/api/records/10666656/files/databaseReverse.db.gz/content -O databaseReverse.db.gz
gunzip databaseReverse.db.gz

Also, you can create manually the database in createDataset

Usage

Run the script:

python3 main.py -d databaseReverse.db

Then, go to localhost:5000 and you can do the two following queries:

• List all the tools available in the database (limit default 10 and skip default is 0):

localhost:5000/listTools

localhost:5000/listTools?limit=10&skip=0

• Search common articles where tools are referenced:

localhost:5000/search


localhost:5000/search?tool=ps2&tool=ps2-v3&tool=3d-pssm