Remove `directories` table (#1683) #7608

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Run time

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Job	Run time
analyze	29s
test (ubuntu-latest, 1.22)	18m 51s
test (ubuntu-latest, 1.23)	20m 33s
test (macos-latest, 1.22)	10m 5s
test (macos-latest, 1.23)	10m 7s
test (windows-latest, 1.22)	13m 38s
test (windows-latest, 1.23)	12m 41s
	1h 26m 24s