Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

NIDM-Results export #45

Open
wants to merge 30 commits into
base: master
Choose a base branch
from
Open

NIDM-Results export #45

wants to merge 30 commits into from

Commits on Mar 14, 2017

  1. Create json structure for nidm export

    cmaumet committed Mar 14, 2017
    Configuration menu
    Copy the full SHA
    1f56876 View commit details
    Browse the repository at this point in the history

  2. Save and load NIDM json from file

    cmaumet committed Mar 14, 2017
    Configuration menu
    Copy the full SHA
    4530ddb View commit details
    Browse the repository at this point in the history

  3. Remove special characters from field names 

    To avoid « Invalid field name » error in Matlab
    cmaumet committed Mar 14, 2017
    Configuration menu
    Copy the full SHA
    e342f94 View commit details
    Browse the repository at this point in the history

  4. first run on test one sample

    cmaumet committed Mar 14, 2017
    Configuration menu
    Copy the full SHA
    02d3cd9 View commit details
    Browse the repository at this point in the history

  5. Add permutation terms

    cmaumet committed Mar 14, 2017
    Configuration menu
    Copy the full SHA
    ca62a2a View commit details
    Browse the repository at this point in the history

  6. fix: statmap inside contrasts

    cmaumet committed Mar 14, 2017
    Configuration menu
    Copy the full SHA
    6f06667 View commit details
    Browse the repository at this point in the history

Commits on Mar 16, 2017

  1. Add error models

    cmaumet committed Mar 16, 2017
    Configuration menu
    Copy the full SHA
    bbfeef1 View commit details
    Browse the repository at this point in the history

Commits on Mar 24, 2017

  1. testDataDir should be empty

    cmaumet committed Mar 24, 2017
    Configuration menu
    Copy the full SHA
    628d2d9 View commit details
    Browse the repository at this point in the history

Commits on Mar 29, 2017

  1. Add test functions to path when loading SnPM toolbox

    cmaumet committed Mar 29, 2017
    Configuration menu
    Copy the full SHA
    2a6a777 View commit details
    Browse the repository at this point in the history

Commits on Mar 31, 2017

  1. Use map rather than struct

    cmaumet committed Mar 31, 2017
    Configuration menu
    Copy the full SHA
    4c0d1c1 View commit details
    Browse the repository at this point in the history

Commits on Apr 20, 2017

  1. Save regressor names to nidm_json

    cmaumet committed Apr 20, 2017
    Configuration menu
    Copy the full SHA
    8287c41 View commit details
    Browse the repository at this point in the history

  2. Use map rather than structure for nidm_json

    cmaumet committed Apr 20, 2017
    Configuration menu
    Copy the full SHA
    c2fb4ee View commit details
    Browse the repository at this point in the history

  3. Save contrast images (and store in nidm_json)

    cmaumet committed Apr 20, 2017
    Configuration menu
    Copy the full SHA
    f5916cf View commit details
    Browse the repository at this point in the history

  4. Save contrast std error image

    cmaumet committed Apr 20, 2017
    Configuration menu
    Copy the full SHA
    56306a4 View commit details
    Browse the repository at this point in the history

  5. Cluster forming threshold is height threshold

    cmaumet committed Apr 20, 2017
    Configuration menu
    Copy the full SHA
    0d27f51 View commit details
    Browse the repository at this point in the history

  6. Add missing NIDM info

    cmaumet committed Apr 20, 2017
    Configuration menu
    Copy the full SHA
    038165d View commit details
    Browse the repository at this point in the history

Commits on Apr 24, 2017

  1. Changes needed to write the grand mean

    @nicholst
    nicholst committed Apr 24, 2017
    Configuration menu
    Copy the full SHA
    3352874 View commit details
    Browse the repository at this point in the history

Commits on Apr 27, 2017

  1. Merge remote-tracking branch 'nicholst/WriteGrandMean' into nidm_export

    cmaumet committed Apr 27, 2017
    Configuration menu
    Copy the full SHA
    1c7b9ee View commit details
    Browse the repository at this point in the history

  2. Add all files to delete list

    cmaumet committed Apr 27, 2017
    Configuration menu
    Copy the full SHA
    cb5f43c View commit details
    Browse the repository at this point in the history

  3. Compute grand mean and all images slice-by-slice

    cmaumet committed Apr 27, 2017
    Configuration menu
    Copy the full SHA
    4d10335 View commit details
    Browse the repository at this point in the history

Commits on Apr 28, 2017

  1. Add nidm_ContrastExplainedMeanSquareMap

    cmaumet committed Apr 28, 2017
    Configuration menu
    Copy the full SHA
    b61ff14 View commit details
    Browse the repository at this point in the history

  2. Save max number of permutations in all modules

    cmaumet committed Apr 28, 2017
    Configuration menu
    Copy the full SHA
    729a523 View commit details
    Browse the repository at this point in the history

Commits on Jul 7, 2017

  1. containers to struct

    @cmaumet
    cmaumet committed Jul 7, 2017
    Configuration menu
    Copy the full SHA
    78dbe41 View commit details
    Browse the repository at this point in the history

  2. fixes to make all tests pass

    @cmaumet
    cmaumet committed Jul 7, 2017
    Configuration menu
    Copy the full SHA
    76a20a9 View commit details
    Browse the repository at this point in the history

  3. Add user-specified info: space, scanner type, groups

    @cmaumet
    cmaumet committed Jul 7, 2017
    Configuration menu
    Copy the full SHA
    b3656ff View commit details
    Browse the repository at this point in the history

  4. Rename tags in agreement with batch

    @cmaumet
    cmaumet committed Jul 7, 2017
    Configuration menu
    Copy the full SHA
    04e4ee0 View commit details
    Browse the repository at this point in the history

  5. Test results with no NIDM export

    @cmaumet
    cmaumet committed Jul 7, 2017
    Configuration menu
    Copy the full SHA
    d87429c View commit details
    Browse the repository at this point in the history

  6. Update camel case for OBO and NeuroLex terms

    @cmaumet
    cmaumet committed Jul 7, 2017
    Configuration menu
    Copy the full SHA
    cd7a689 View commit details
    Browse the repository at this point in the history

  7. Fix: info now provided by the user in the batch

    @cmaumet
    cmaumet committed Jul 7, 2017
    Configuration menu
    Copy the full SHA
    e33f18c View commit details
    Browse the repository at this point in the history

  8. More use of camel case for OBO and NeuroLex terms

    @cmaumet
    cmaumet committed Jul 7, 2017
    Configuration menu
    Copy the full SHA
    111b094 View commit details
    Browse the repository at this point in the history