This is the R code needed to repeat the anlaysis in the manuscript:
A single-cell atlas of mouse lung development
Nicholas M. Negretti, Erin J. Plosa, John T. Benjamin, Bryce A. Schuler, A. Christian Habermann, Christopher S. Jetter, Peter Gulleman, Claire Bunn, Alice N. Hackett, Meaghan Ransom, Chase J. Taylor, David Nichols, Brittany K. Matlock, Susan H. Guttentag , Timothy S. Blackwell, Nicholas E. Banovich, Jonathan A. Kropski, Jennifer M. S. Sucre
Development (2021) 148 (24): dev199512; doi: https://doi.org/10.1242/dev.199512
An interactive data explorer can also be found here: https://lungcells.app.vumc.org
R version 4.0.2 was used to run all of this code. The environment is stored in an renv. Details can be found in the renv.lock file.