Fixed #998: Speed up stumpi and aampi (#1001) #1844
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests | |
| on: | |
| push: | |
| branches: main | |
| pull_request: | |
| branches: main | |
| jobs: | |
| minimum-version-testing: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.8'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set Up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python Version | |
| run: python -c "import sys; print(sys.version)" | |
| shell: bash | |
| - name: Upgrade Pip | |
| run: python -m pip install --upgrade pip | |
| shell: bash | |
| - name: Generate Minimum Requirements File | |
| run: sed 's/>/=/g' requirements.txt | sed 's/$/\.*/g' > requirements.min.txt | |
| shell: bash | |
| - name: Install Minimum Requirements | |
| run: python -m pip install --upgrade -r requirements.min.txt | |
| shell: bash | |
| - name: Install STUMPY And Other Dependencies | |
| run: python -m pip install --editable .[ci] | |
| shell: bash | |
| - name: Run Black | |
| run: black --check --diff ./ | |
| shell: bash | |
| - name: Run Flake8 | |
| run: flake8 ./ | |
| shell: bash | |
| - name: Install and Link OpenMP | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| echo "Installing OpenMP" | |
| brew install libomp | |
| echo "Linking OpenMP" | |
| brew link --force libomp | |
| echo "Find OpenMP Linking Location" | |
| libfile=`brew list libomp --verbose | grep libomp.dylib` | |
| echo $libfile | |
| echo "Changing @rpath for the omppool.cpython-x-darwin.so shared object to look in $libfile" | |
| ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib $libfile | |
| fi | |
| shell: bash | |
| - name: Show Full Numba Environment | |
| run: python -m numba -s | |
| shell: bash | |
| - name: Run Unit Tests | |
| run: ./test.sh unit | |
| shell: bash | |
| unit-testing: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set Up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python Version | |
| run: python -c "import sys; print(sys.version)" | |
| shell: bash | |
| - name: Upgrade Pip | |
| run: python -m pip install --upgrade pip | |
| shell: bash | |
| - name: Install STUMPY And Other Dependencies | |
| run: python -m pip install --editable .[ci] | |
| shell: bash | |
| - name: Run Black | |
| run: black --check --diff ./ | |
| shell: bash | |
| - name: Run Flake8 | |
| run: flake8 ./ | |
| shell: bash | |
| - name: Install OpenMP | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| echo "Installing OpenMP" | |
| brew install libomp | |
| echo "Linking OpenMP" | |
| brew link --force libomp | |
| echo "Find OpenMP Linking Location" | |
| libfile=`brew list libomp --verbose | grep libomp.dylib` | |
| echo $libfile | |
| echo "Changing @rpath for the omppool.cpython-x-darwin.so shared object to look in $libfile" | |
| ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib $libfile | |
| fi | |
| shell: bash | |
| - name: Show Full Numba Environment | |
| run: python -m numba -s | |
| shell: bash | |
| - name: Run Unit Tests | |
| run: ./test.sh unit | |
| shell: bash | |
| coverage-testing: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set Up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python Version | |
| run: python -c "import sys; print(sys.version)" | |
| shell: bash | |
| - name: Upgrade Pip | |
| run: python -m pip install --upgrade pip | |
| shell: bash | |
| - name: Install STUMPY And Other Dependencies | |
| run: python -m pip install --editable .[ci] | |
| shell: bash | |
| - name: Run Black | |
| run: black --check --diff ./ | |
| shell: bash | |
| - name: Run Flake8 | |
| run: flake8 ./ | |
| shell: bash | |
| - name: Link OpenMP | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| echo "Installing OpenMP" | |
| brew install libomp | |
| echo "Linking OpenMP" | |
| brew link --force libomp | |
| echo "Find OpenMP Linking Location" | |
| libfile=`brew list libomp --verbose | grep libomp.dylib` | |
| echo $libfile | |
| echo "Changing @rpath for the omppool.cpython-x-darwin.so shared object to look in $libfile" | |
| ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib $libfile | |
| fi | |
| shell: bash | |
| - name: Show Full Numba Environment | |
| run: python -m numba -s | |
| shell: bash | |
| - name: Run Coverage Tests | |
| run: ./test.sh coverage | |
| shell: bash | |
| - name: Generate Coverage Report | |
| run: ./test.sh report coverage.stumpy.xml | |
| shell: bash | |
| - name: Upload Coverage Tests Results | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.stumpy.xml | |
| verbose: true | |
| token: ${{ secrets.CODECOV_TOKEN }} |