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Update ete_macros.xml #168

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merged 1 commit into from
Mar 7, 2024
Merged

Update ete_macros.xml #168

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1 change: 1 addition & 0 deletions tools/ete/ete_gene_cnv.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@
<macros>
<import>ete_macros.xml</import>
</macros>
<expand macro="bio_tools"/>
<expand macro="requirements" />
<command detect_errors="exit_code"><![CDATA[
python '$__tool_directory__/ete_gene_cnv.py'
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1 change: 1 addition & 0 deletions tools/ete/ete_genetree_splitter.xml
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Expand Up @@ -3,6 +3,7 @@
<macros>
<import>ete_macros.xml</import>
</macros>
<expand macro="bio_tools"/>
<expand macro="requirements" />
<stdio>
<!-- Anything other than zero is an error -->
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1 change: 1 addition & 0 deletions tools/ete/ete_homology_classifier.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,6 +12,7 @@
</param>
</xml>
</macros>
<expand macro="bio_tools"/>
<expand macro="requirements" />
<command detect_errors="exit_code">
<![CDATA[
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1 change: 1 addition & 0 deletions tools/ete/ete_init_taxdb.xml
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Expand Up @@ -3,6 +3,7 @@
<macros>
<import>ete_macros.xml</import>
</macros>
<expand macro="bio_tools"/>
<expand macro="requirements" />
<command detect_errors="exit_code"><![CDATA[
python '$__tool_directory__/ete_init_taxdb.py'
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1 change: 1 addition & 0 deletions tools/ete/ete_lineage_generator.xml
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Expand Up @@ -3,6 +3,7 @@
<macros>
<import>ete_macros.xml</import>
</macros>
<expand macro="bio_tools"/>
<expand macro="requirements" />
<command detect_errors="exit_code"><![CDATA[
python '$__tool_directory__/ete_lineage_generator.py'
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5 changes: 5 additions & 0 deletions tools/ete/ete_macros.xml
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@@ -1,6 +1,11 @@
<?xml version="1.0"?>
<macros>
<token name="@VERSION@">3.1.2</token>
<xml name="bio_tools">
<xrefs>
<xref type="bio.tools">ete</xref>
</xrefs>
</xml>
<xml name="requirements">
<requirements>
<requirement type="package" version="@VERSION@">ete3</requirement>
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1 change: 1 addition & 0 deletions tools/ete/ete_mod.xml
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Expand Up @@ -3,6 +3,7 @@
<macros>
<import>ete_macros.xml</import>
</macros>
<expand macro="bio_tools"/>
<expand macro="requirements" />
<command detect_errors="exit_code"><![CDATA[
ete3 mod -t
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1 change: 1 addition & 0 deletions tools/ete/ete_species_tree_generator.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,7 @@
<macros>
<import>ete_macros.xml</import>
</macros>
<expand macro="bio_tools"/>
<expand macro="requirements" />
<stdio>
<!-- Anything other than zero is an error -->
Expand Down
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