Execute Jupyter Notebooks #9
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| name: Execute Jupyter Notebooks | |
| on: | |
| push: | |
| paths: ['Code/**.ipynb', '**/run_notebooks.yml'] | |
| pull_request: | |
| paths: ['Code/**.ipynb', '**/run_notebooks.yml'] | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 6 1 * *' # Runs at 06:00 UTC 1st day of the month | |
| jobs: | |
| run-notebooks: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| - name: Install Dependencies | |
| run: | | |
| pip install nbconvert ipykernel | |
| pip install numpy matplotlib biogeme pandas seaborn scikit-learn | |
| - name: Find and Execute Jupyter Notebooks | |
| run: | | |
| find Code -name "*.ipynb" -print0 | while IFS= read -r -d $'\0' notebook; do | |
| # Save the current directory | |
| current_dir=$(pwd) | |
| # Extract the directory path of the notebook | |
| notebook_dir=$(dirname "$notebook") | |
| # Change to the notebook directory | |
| cd "$notebook_dir" | |
| # Execute the notebook | |
| if jupyter nbconvert --to notebook --execute "$(basename "$notebook")" --output "$(basename "$notebook")"; then | |
| echo -e "\u2705 Passed: $notebook" | |
| else | |
| echo -e "\u274C Failed: $notebook" | |
| fi | |
| # Change back to the original directory | |
| cd "$current_dir" | |
| done |