Add missing T-test values #82
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test Sea and publish dockerfiles | |
| on: | |
| push: | |
| pull_request: | |
| branches: [ master ] | |
| workflow_dispatch: | |
| inputs: | |
| debug_enabled: | |
| description: 'Run the build with tmate debugging enabled (https://github.com/marketplace/actions/debugging-with-tmate)' | |
| required: false | |
| default: "false" | |
| env: | |
| REGISTRY: ghcr.io | |
| jobs: | |
| run-tests: | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os-name: [xenial, bionic, focal, centos7, fedora32, fedora33, fedora34] | |
| name: Test in ${{ matrix.os-name }} | |
| steps: | |
| - run: docker --version | |
| - name: Git checkout | |
| uses: actions/checkout@v2 | |
| - run: cd ${{ github.workspace }} | |
| - run: docker build . -f containers/base/Dockerfile.${{ matrix.os-name }} -t imagetest:${{ matrix.os-name }} | |
| - run: docker run --rm -v $PWD:$PWD -w $PWD imagetest:${{ matrix.os-name }} make test debug_opts="-g -ggdb --coverage -fprofile-arcs -ftest-coverage" | |
| - run: docker run --rm -v $PWD:$PWD -w $PWD imagetest:${{ matrix.os-name }} bats tests/tests.bats tests/test_flusher.bats tests/test_prefetch.bats | |
| - run: docker run --rm -v $PWD:$PWD -w $PWD imagetest:${{ matrix.os-name }} bash -c "MOUNT=$PWD/mount SOURCE=$PWD/source SOURCE_1=$PWD/source_1 levels=1 bash tests/setup.bash" | |
| - run: docker run --rm -v $PWD:$PWD -w $PWD -e SEA_HOME=$PWD -e LD_PRELOAD=$PWD/build/sea.so imagetest:${{ matrix.os-name }} tests/test_custom | |
| - uses: codecov/codecov-action@v1 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: true | |
| gcov_executable: docker run --rm -v $PWD:$PWD -w $PWD imagetest:${{ matrix.os-name }} gcov -abcfu build | |
| - name: setup tmate session | |
| if: ${{ failure() && github.event_name == 'workflow_dispatch' && github.event.inputs.debug_enabled == 'true' }} | |
| uses: mxschmitt/action-tmate@v3 | |
| build-and-push-base-image: | |
| if: github.event_name != 'pull_request' | |
| needs: run-tests | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| os-name: [ xenial, bionic, focal, centos7, fedora32, fedora33, fedora34 ] | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Log in to the Container registry | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata (tags, labels) for Docker - Base images | |
| id: meta | |
| uses: docker/metadata-action@v3 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ github.repository_owner }}/sea-${{ matrix.os-name }} | |
| - name: Build and push Docker image - Base images | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: . | |
| file: containers/base/Dockerfile.${{ matrix.os-name }} | |
| pull: true | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| build-and-push-application-image: | |
| if: github.event_name != 'pull_request' | |
| needs: [ run-tests, build-and-push-base-image ] | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| application: [ fmriprep, AFNI, fsl, HCP, SPM ] | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Log in to the Container registry | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ${{ env.REGISTRY }} | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Extract metadata (tags, labels) for Docker - Application images | |
| id: meta | |
| uses: docker/metadata-action@v3 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ github.repository_owner }}/sea-${{ matrix.application }} | |
| - name: Build and push Docker image | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: . | |
| file: containers/applications/Dockerfile.${{ matrix.application }} | |
| pull: true | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |