Move towards using Ruff as a linter and formatter

[AntObi]

Ruff as a linter and formatter tool

Description

• Replace existing formatting and lining tools with ruff

Fixes #297

Type of change

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to not work as expected)

How Has This Been Tested?

ruff check and ruff format have extensively been used to check through the code and any issues have either been fixed or excluded for now.

Test Configuration:

• Python version: 3.10
• Operating System: macOS

Reviewers

N/A

Checklist:

• My code follows the style guidelines of this project
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to the documentation
• My changes generate no new warnings
• I have added tests that prove my fix is effective or that my feature works
• New and existing unit tests pass locally with my changes
• Any dependent changes have been merged and published in downstream modules
• I have checked my code and corrected any misspellings

TODO

• Work through the exceptions in pyproject.toml to enable ruff to fully lint and format the whole codebase

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