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Issues list

how to install clusterProfiler 4.2.2 version?
#740 opened Nov 11, 2024 by toddey
2
smth wrong with enrichGO
#737 opened Oct 30, 2024 by tsoshukming
1
Meta-analysis Functionality is Not Available
#734 opened Oct 22, 2024 by DarioS
Mitochondrial Genes and Annotations missing from EnrichGO
#733 opened Oct 21, 2024 by Dragonmasterx87
3
How to run enrichment analysis of metabolites using clusterProfier
#731 opened Oct 15, 2024 by Krithika-Bhuvan
1
how to compare different conditions
#730 opened Sep 30, 2024 by Flu09
enrichWP is not working for a few organisms
#729 opened Sep 30, 2024 by prateekgv
3
gofilter function ERROR: object 'topNode' not found
#728 opened Sep 29, 2024 by yulchen810
1
Error: unable to open database file Traceback:
#727 opened Sep 27, 2024 by jmzhang1911
1
clusterProfiler: BgRatio N value does not equal set gene universe size
#723 opened Sep 13, 2024 by fafaris39
1
using compareCluster to compare gene sets from different species
#722 opened Sep 13, 2024 by lanasushko
1
problem with gseGO()
#721 opened Aug 31, 2024 by Flu09
1
Question about GO terms in clusterProfiler
#720 opened Aug 22, 2024 by shuaizh117
3
RStudio is crashing when running compareCluster
#719 opened Aug 22, 2024 by nfancy
7 of 8 tasks
1
Can't install clusterProfiler 4.12.3 on R-4.4.0
#717 opened Aug 21, 2024 by davetang
4 of 6 tasks
1
ridgePlot Axis Ticks Spacing is Sometimes Insufficient
#716 opened Aug 19, 2024 by DarioS
1
dplyr and clusterprofile version 4.10.1
#714 opened Aug 9, 2024 by lzy604
1
ERROR in enrichGO,when seting ont = "ALL",Error in data.frame(..., check.names = FALSE) : 行名里有缺失值。
#713 opened Aug 6, 2024 by XIANZHE-LI
1
KEGG analysis of metabolites
#712 opened Jul 30, 2024 by Echo-ylq
2
Unable to install r package for clusterProfiler
#711 opened Jul 23, 2024 by shaliniC23
1
enrichKegg function, qvalueCutoff not working, getting as well non-significant results
#710 opened Jul 22, 2024 by nina-hahn
4
gseKEGG function running indefinitely with a gene list of over 3000 genes
#709 opened Jul 21, 2024 by Sophia409
1
No gene can be mapped when using enrichKEGG
#708 opened Jul 19, 2024 by Yanqiu-T
11
"I performed the gseGO function using clusterProfiler for all ontologies together, but I wasn't able to apply the simplify function to remove redundancy. I tried various options suggested online, but none worked. As a workaround, I ran gseGO for each ontology (BP, MF, CC) separately and then removed redundancy for each ontology using GOsim. Is it correct to combine the results from all ontologies into one file and then combining it with metadata from one ontology (e.g., the output of gseGO for BP) to create enrichment plots?" or what could be the easiest way to perfrom that
#707 opened Jul 16, 2024 by Sidragull57
8 tasks
13
"400 Bad Request" using enrichKEGG function from the clusterProfiler
#706 opened Jul 15, 2024 by RouaPopescu
2
ProTip! no:milestone will show everything without a milestone.