Commonly used cancer cell line

• Bladder cancer (BLCA)

  • Non-papillary: T24
  • Papillary: RT4

• Breast cancer (BRCA)

  • Infiltrating ductal: MCF-7
  • Infiltrating lobular: MDA-MB-134-VI
  • ER+: MCF7
  • HER2+: SK-BR-3
  • Triple negative: MDA-MB-231

• Bile duct cancer (CHOL)

  • Intrahepatic: HuCCT1

• Colorectal cancer (COADREAD)

  • Colon adenocarcinoma (COAD): HT-29
  • Colon mucinous adenocarcinoma: NA
  • Rectal adenocarcinoma (READ): RCM-1
  • KRAS mutated: HCT116

• Esophagus cancer (ESCA)

  • Esophagus adenocarcinoma: OE33
  • Esophagus squamous cell carcinoma: TE-1

• Glioma

  • Glioblastoma multiforme (GBM): U-87_MG
  • Astrocytoma (LGG): U-87_MG
  • Oligoastrocytoma (LGG): NA
  • Oligodendroglioma (LGG): Hs_683

• Head and neck squamous cell carcinoma (HNSC)

  • HNSC: FaDu

• Kidney cancer

  • Kidney chromophobe (KICH): NA
  • Kidney renal clear cell carcinoma (KIRC): 786-O
  • Kidney renal papillary cell carcinoma (KIRP): ACHN

• Liver cancer

  • Liver hepatocellular carcinoma (LIHC): Hep_G2

• Lung cancer

  • Lung adenocarcinoma (LUAD): A549
  • LUAD KRAS mutated: A549
  • LUAD ALK translocated: A549
  • Lung squamous cell carcinoma (LUSC): SK-MES-1

• Mesothelioma (MESO)

  • Epithelioid: NA
  • Biphasic: MSTO-211H

• Ovarian cancer (OV)

  • OV: SK-OV-3

• Pancreatic cancer (PAAD)

  • PAAD: PANC-1

• Prostatic cancer (PRAD)

  • PRAD: PC-3

• Melanoma (SKCM)

  • SKCM: A-375

• Stomach cancer (STAD)

  • Diffuse: MKN-45
  • Mucinous: NA
  • Tubular: MKN74

• Thyroid cancer (THCA)

  • Classical/usual: NA
  • Follicular: FTC-133
  • Tall cell: NA

• Endometrium cancer

  • Endometrioid (UCEC): RL95-2
  • Serous (UCEC): NA
  • Mixed (UCEC): NA
  • Uterine carcinosarcoma (UCS): ESS-1