Releases · ZWang-Lab/tRFtarget

Major Updates:

Added Rattus norvegicus as a new organism in database.
Added high quality tRFs from other 6 tRF-related databasses (tsRBase, tsRFun, MINTbase v2.0, tRFexplorer, tatDB and OncotRF).
Added rRNA and lncRNA as target RNAs for the prediction of binding sites.
Added more manually curated publications to our collection.
Optimized the design of the MySQL data tables that store the predicted binding sites, facilitating quicker retrieval amidst vast volumes of data.
Redesigned the user interface of searching targets, and separate the three searching ways of tRFtarget (search by tRF/gene/RNA) into 3 separated web pages.
Optimized the design of the web page that displays the retrieved binding sites, significantly improving rendering speed to decrease wait times and enabling the display of a larger amount of data at once. An enhanced search and filtering function for the displayed binding sites has also been implemented on this web page.
Optimized the design of the web page displaying gene-level experimental evidences of binding sites, incorporating an enhanced search and filtering function.
Update the contents on Home, Method, Statistics and Help page.
Improved the design of the backend framework of our web server.

Added a new searching way "Adavanced Search" to search binding sites between one tRF and one target RNA or Gene.
Added "Browse" functionality to facilitate the exploration of all covered tRFs, genes and RNAs.
Published our binding sites prediction pipeline, tRFtarget-pipeline. Designed a new web service that allows users to access and run the pipeline online.
Add support for standardized tRF IDs by tDRnamer.
Add support for external linking to contents in tRFtarget.
Besides DAVID, Integration of an additional function pathway analysis tool ShinyGO and Gene Ontology annotation for the predicted target genes of a single tRF.