Initialise PETSc, drop LinSolveExprs in lower_petsc, add PETScStruct, create matvec callback and move files into PETSc folder #45
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| name: CI-petsc | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| on: | |
| # Trigger the workflow on push or pull request, | |
| # but only for the master branch | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| pytest: | |
| name: ${{ matrix.name }}-${{ matrix.set }} | |
| runs-on: "${{ matrix.os }}" | |
| env: | |
| DEVITO_ARCH: "${{ matrix.arch }}" | |
| DEVITO_LANGUAGE: ${{ matrix.language }} | |
| strategy: | |
| # Prevent all build to stop if a single one fails | |
| fail-fast: false | |
| matrix: | |
| name: [ | |
| pytest-docker-py38, | |
| pytest-docker-py39, | |
| pytest-docker-py312 | |
| ] | |
| include: | |
| - name: pytest-docker-py38 | |
| python-version: '3.8' | |
| os: ubuntu-latest | |
| arch: "gcc" | |
| language: "C" | |
| sympy: "1.12" | |
| - name: pytest-docker-py39 | |
| python-version: '3.9' | |
| os: ubuntu-latest | |
| arch: "gcc" | |
| language: "C" | |
| sympy: "1.12" | |
| - name: pytest-docker-py312 | |
| python-version: '3.12' | |
| os: ubuntu-latest | |
| arch: "gcc" | |
| language: "C" | |
| sympy: "1.12" | |
| steps: | |
| - name: Checkout devito | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| if: "!contains(matrix.name, 'docker')" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Build docker image | |
| run: | | |
| docker build . --file docker/Dockerfile.devito --tag devito_img --build-arg base=zoeleibowitz/zoeleibowitz:petsc | |
| - name: Set run prefix | |
| run: | | |
| echo "RUN_CMD=docker run --rm -t -e CODECOV_TOKEN=${{ secrets.CODECOV_TOKEN }} --name testrun devito_img" >> $GITHUB_ENV | |
| fi | |
| id: set-run | |
| - name: Set tests | |
| run : | | |
| echo "TESTS=tests/test_petsc.py" >> $GITHUB_ENV | |
| fi | |
| id: set-tests | |
| - name: Set pip flags for latest python (3.12) | |
| run: | | |
| if [ "${{ matrix.python-version }}" == '3.12' ]; then | |
| echo "PIPFLAGS='--break-system-packages'" >> $GITHUB_ENV | |
| fi | |
| - name: Check configuration | |
| run: | | |
| ${{ env.RUN_CMD }} python3 -c "from devito import configuration; print(''.join(['%s: %s \n' % (k, v) for (k, v) in configuration.items()]))" | |
| - name: Test with pytest | |
| run: | | |
| ${{ env.RUN_CMD }} pytest -k "${{ matrix.test-set }}" -m "not parallel" --cov --cov-config=.coveragerc --cov-report=xml ${{ env.TESTS }} | |
| - name: Upload coverage to Codecov | |
| if: "!contains(matrix.name, 'docker')" | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| name: ${{ matrix.name }} |