Initialise PETSc, drop LinSolveExprs in lower_petsc, add PETScStruct, create matvec callback and move files into PETSc folder #321
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| name: CI-core | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| on: | |
| # Trigger the workflow on push or pull request, | |
| # but only for the master branch | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| pytest: | |
| name: ${{ matrix.name }}-${{ matrix.set }} | |
| runs-on: "${{ matrix.os }}" | |
| env: | |
| DEVITO_ARCH: "${{ matrix.arch }}" | |
| DEVITO_LANGUAGE: ${{ matrix.language }} | |
| OMP_NUM_THREADS: 2 | |
| strategy: | |
| # Prevent all build to stop if a single one fails | |
| fail-fast: false | |
| matrix: | |
| name: [ | |
| pytest-ubuntu-py311-gcc11-noomp, | |
| pytest-ubuntu-py38-gcc12-omp, | |
| pytest-ubuntu-py38-gcc7-omp, | |
| pytest-ubuntu-py310-gcc10-noomp, | |
| pytest-ubuntu-py312-gcc13-omp, | |
| pytest-ubuntu-py39-gcc9-omp, | |
| pytest-osx-py312-clang-omp, | |
| pytest-docker-py39-gcc-omp, | |
| pytest-docker-py39-icx-omp | |
| ] | |
| set: [base, adjoint] | |
| include: | |
| - name: pytest-ubuntu-py311-gcc11-noomp | |
| python-version: '3.11' | |
| os: ubuntu-22.04 | |
| arch: "gcc-11" | |
| language: "C" | |
| sympy: "1.11" | |
| - name: pytest-ubuntu-py38-gcc12-omp | |
| python-version: '3.8' | |
| os: ubuntu-22.04 | |
| arch: "gcc-12" | |
| language: "openmp" | |
| sympy: "1.10" | |
| - name: pytest-ubuntu-py38-gcc7-omp | |
| python-version: '3.8' | |
| os: ubuntu-20.04 | |
| arch: "gcc-7" | |
| language: "openmp" | |
| sympy: "1.9" | |
| - name: pytest-ubuntu-py310-gcc10-noomp | |
| python-version: '3.10' | |
| os: ubuntu-20.04 | |
| arch: "gcc-10" | |
| language: "C" | |
| sympy: "1.10" | |
| - name: pytest-ubuntu-py312-gcc13-omp | |
| python-version: '3.12' | |
| os: ubuntu-24.04 | |
| arch: "gcc-13" | |
| language: "openmp" | |
| sympy: "1.11" | |
| - name: pytest-ubuntu-py39-gcc9-omp | |
| python-version: '3.9' | |
| os: ubuntu-20.04 | |
| arch: "custom" | |
| language: "openmp" | |
| sympy: "1.9" | |
| - name: pytest-osx-py312-clang-omp | |
| python-version: '3.12' | |
| os: macos-latest | |
| arch: "clang" | |
| language: "C" | |
| sympy: "1.9" | |
| - name: pytest-docker-py39-gcc-omp | |
| python-version: '3.9' | |
| os: ubuntu-latest | |
| arch: "gcc" | |
| language: "openmp" | |
| sympy: "1.12" | |
| - name: pytest-docker-py39-icx-omp | |
| python-version: '3.9' | |
| os: ubuntu-latest | |
| arch: "icx" | |
| language: "openmp" | |
| sympy: "1.12" | |
| - set: base | |
| test-set: 'not adjoint' | |
| - set: adjoint | |
| test-set: 'adjoint' | |
| exclude: | |
| - name: pytest-osx-py312-clang-omp | |
| set: adjoint | |
| steps: | |
| - name: Checkout devito | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| if: "!contains(matrix.name, 'docker')" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Build docker image | |
| if: contains(matrix.name, 'docker') | |
| run: | | |
| docker build . --file docker/Dockerfile.devito --tag devito_img --build-arg base=devitocodes/bases:cpu-${{ matrix.arch }} | |
| - name: Set run prefix | |
| run: | | |
| if [[ "${{ matrix.name }}" =~ "docker" ]]; then | |
| echo "RUN_CMD=docker run --rm -t -e CODECOV_TOKEN=${{ secrets.CODECOV_TOKEN }} --name testrun devito_img" >> $GITHUB_ENV | |
| else | |
| echo "RUN_CMD=" >> $GITHUB_ENV | |
| fi | |
| id: set-run | |
| - name: Install ${{ matrix.arch }} compiler | |
| if: "runner.os == 'linux' && !contains(matrix.name, 'docker') && matrix.arch !='custom' " | |
| run : | | |
| sudo apt-get install -y ${{ matrix.arch }} | |
| - name: Set tests (reduced number for OSX) | |
| run : | | |
| if [ "${{ runner.os }}" == 'macOS' ]; then | |
| echo "TESTS=tests/test_operator.py" >> $GITHUB_ENV | |
| else | |
| echo "TESTS=tests/" >> $GITHUB_ENV | |
| fi | |
| id: set-tests | |
| - name: Set pip flags for latest python (3.12) | |
| run: | | |
| if [ "${{ matrix.python-version }}" == '3.12' ]; then | |
| echo "PIPFLAGS='--break-system-packages'" >> $GITHUB_ENV | |
| fi | |
| - name: Install dependencies | |
| if: "!contains(matrix.name, 'docker')" | |
| run: | | |
| pip install ${{ env.PIPFLAGS }} --upgrade pip | |
| pip install ${{ env.PIPFLAGS }} -e .[tests] | |
| pip install ${{ env.PIPFLAGS }} sympy==${{matrix.sympy}} | |
| - name: Check configuration | |
| run: | | |
| ${{ env.RUN_CMD }} python3 -c "from devito import configuration; print(''.join(['%s: %s \n' % (k, v) for (k, v) in configuration.items()]))" | |
| - name: Test with pytest | |
| run: | | |
| ${{ env.RUN_CMD }} pytest -k "${{ matrix.test-set }}" -m "not parallel" --cov --cov-config=.coveragerc --cov-report=xml ${{ env.TESTS }} | |
| - name: Upload coverage to Codecov | |
| if: "!contains(matrix.name, 'docker')" | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| name: ${{ matrix.name }} |