Releases · allen-cell-animated/timelapse-colorizer

This update adds support for reading binary Parquet data, adds panning and zoom to the viewport, and a plethora of other bugfixes and minor improvements.

Additionally, changes were made to the landing page as part of Timelapse Feature Explorer's official release, including linking to our new manuscript submission (Dixon et al. 2024).

What's Changed

refactor: Renamed repo to timelapse-colorizer by @ShrimpCryptid in #353
refactor: Bump major version by @ShrimpCryptid in #351
fix: Obscured dropdown items, abrupt dropdown close by @ShrimpCryptid in #360
feat: Show filter count in tab title by @ShrimpCryptid in #369
fix: Fixed tooltip and axes titles when using the scatterplot Time feature by @ShrimpCryptid in #367
feat: Add zoom and panning to the canvas by @ShrimpCryptid in #347
feat: Changed play button to primary styling by @ShrimpCryptid in #374
fix: Header and dropdown spacing, tooltip Z-height by @ShrimpCryptid in #365
fix: Change role and role session name by @imashmash in #375
fix: Bad feature values are now shown as NaN instead of Infinity by @ShrimpCryptid in #377
fix: Fixed bug where units would not appear on the UI. by @ShrimpCryptid in #383
feat: Update error page to match website-3d-cell-viewer by @ShrimpCryptid in #384
feat: Update landing page for NucMorph publication + styling by @ShrimpCryptid in #385
fix: Link hover colors and disabled inputs by @ShrimpCryptid in #386
feature: Loading spinner for datasets by @ShrimpCryptid in #396
fix: URL no longer updates while dataset is still unloaded by @ShrimpCryptid in #388
doc: Updated BioRxiv link by @ShrimpCryptid in #399
refactor: Make FrameCache generic by @ShrimpCryptid in #393
feature: Reserve cache keys by @ShrimpCryptid in #394
fix: TFE landing page layout by @ShrimpCryptid in #410
feat: Added progress circle for the dataset load by @ShrimpCryptid in #404
feature: Accept binary .parquet data by @ShrimpCryptid in #409

New Contributors

@imashmash made their first contribution in #375

Full Changelog: v1.0.0...v1.1.0

First major version release for Timelapse Feature Explorer! 🎉

New Contributors

@toloudis made their first contribution in #10
@frasercl made their first contribution in #12
@ShrimpCryptid made their first contribution in #24
@lynwilhelm made their first contribution in #103
@griffinfujioka made their first contribution in #271

What's Changed

Full auto-generated release notes:

start work on displaying track info by @toloudis in #10
Fix/generic data loader by @frasercl in #12
Feature/highlight selected by @toloudis in #14
add full time controls by @toloudis in #15
feat: Added UI for finding and seeking to a track by ID by @ShrimpCryptid in #24
feat: Added diverging color ramps, feature range labels by @ShrimpCryptid in #26
feat: Linting and typechecking GitHub workflows by @ShrimpCryptid in #27
feat: Added checkbox for locking color map range by @ShrimpCryptid in #28
feat: Image sequence recording by @ShrimpCryptid in #29
feat: Editable ranges and masking for color map by @ShrimpCryptid in #31
feat: load metadata from URL by @ShrimpCryptid in #38
doc: Update project documentation README by @ShrimpCryptid in #41
feat: Centroids by @ShrimpCryptid in #43
feat: Show hovered feature values by @ShrimpCryptid in #45
feat: Define datasets in URL by @ShrimpCryptid in #46
feat: Track Path by @ShrimpCryptid in #44
fix: Hide track path when track completes by @ShrimpCryptid in #54
feat: Scaling in generate_data.py by @ShrimpCryptid in #53
feat: Convert project to React by @ShrimpCryptid in #63
feat: Updated color ramps by @ShrimpCryptid in #83
Fix indexing bugs with tracks by @toloudis in #64
feat: UI Update 1 - Header Layout by @ShrimpCryptid in #88
doc: Documented data format by @ShrimpCryptid in #86
feat: UI Update 2 - Collections and Color Ramp Selection by @ShrimpCryptid in #97
Create ux_issue.md by @lynwilhelm in #103
feat: UI update 3 - Layout and Input Styling by @ShrimpCryptid in #101
feat: UI Update 4 - Export Modal by @ShrimpCryptid in #102
feat: UI Update 5 - Custom coloring for out-of-range and outlier values. by @ShrimpCryptid in #105
feat: UI Update 6 - Styling Fixes and Accessibility by @ShrimpCryptid in #107
feat: UI Update - Milestone 1 by @ShrimpCryptid in #108
feat: Export MP4 Video Files by @ShrimpCryptid in #109
feat: Playback speed controls by @ShrimpCryptid in #113
refactor: Cleanup for data scripts by @ShrimpCryptid in #112
fix: Replace HTTP resource links with HTTPS by @ShrimpCryptid in #117
refactor: Cleanup Internals by @ShrimpCryptid in #111
feat: Units support and labeling by @ShrimpCryptid in #120
feat: Added units and feature scaling to convert_nucmorph_data.py by @ShrimpCryptid in #114
feat: Conversion script for EMT nuclear data deliverable by @ShrimpCryptid in #121
fix: Fixed nucmorph data conversion script by @ShrimpCryptid in #130
feat: Feature Thresholding by @ShrimpCryptid in #123
Fix merge of feature thresholds to incorrect branch by @ShrimpCryptid in #132
feat: Disabling feature thresholds by @ShrimpCryptid in #128
feat: Color Map reversing, URL saving by @ShrimpCryptid in #127
feat: Loading feature thresholds from URL by @ShrimpCryptid in #129
fix: Z-indexing issues with color ramp dropdown and modals by @ShrimpCryptid in #137
refactor: Moved viewer settings to tab by @ShrimpCryptid in #139
feat: Use dropdown for speed control by @ShrimpCryptid in #138
feat: Show recent datasets in load dropdown by @ShrimpCryptid in #141
allow more types of NaN data by @toloudis in #145
feat: Support /allen file links by @ShrimpCryptid in #144
feat: Scale Bar by @ShrimpCryptid in #136
refactor: Moved tab contents to their own components by @ShrimpCryptid in #140
feat: Physical time by @ShrimpCryptid in #149
fix: Adds support for ordered feature arrays by @ShrimpCryptid in #158
feat: Feature types in Dataset by @ShrimpCryptid in #151
fix: Include UI overlays in export by @ShrimpCryptid in #156
feat: Categorical palettes by @ShrimpCryptid in #152
fix: Use placeholders for unknown bounds by @ShrimpCryptid in #157
feat: Categorical color selection by @ShrimpCryptid in #153
feat: Background images by @ShrimpCryptid in #168
feature: GitHub pages build by @ShrimpCryptid in #175
refactor: Moved default color ramp and palettes by @ShrimpCryptid in #173
fix: Build and deploy GitHub action no longer deletes existing files by @ShrimpCryptid in #178
feat: Categorical thresholding by @ShrimpCryptid in #170
fix: Allowed time slider interaction during playback by @ShrimpCryptid in #176
refactor: Viewer config objects by @ShrimpCryptid in #174
feature: Settings layouts by @ShrimpCryptid in #172
feat: Scatterplot between features by @ShrimpCryptid in #180
refactor: Changed Dataset outliers to load as a buffer instead of texture by @ShrimpCryptid in #193
fix: Fixed bad aspect ratio when loading datasets by @ShrimpCryptid in #196
fix: Fixed bug where changing a threshold would reset the color map range by @ShrimpCryptid in #199
fix: Fixed categorical thresholds not changing on click by @ShrimpCryptid in https://github...