Optional normalization for generic_cell_clustering.ipynb #667
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| types: [labeled, opened, synchronize, reopened] | |
| workflow_dispatch: | |
| merge_group: | |
| types: [checks_requested] | |
| branches: [main] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| permissions: | |
| contents: read # to fetch code (actions/checkout) | |
| jobs: | |
| get_dataset: | |
| env: | |
| cache-name: dataset | |
| name: Get / Update Example Dataset | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout ${{github.repository }} | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Restore Example Dataset Cache | |
| uses: actions/cache@v3 | |
| id: dataset-cache | |
| with: | |
| path: ./data/cache/ | |
| key: huggingface-${{ env.cache-name }} | |
| enableCrossOsArchive: true | |
| - name: Set up Python | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: "3.x" | |
| cache-dependency-path: "**/pyproject.toml" | |
| cache: "pip" | |
| - name: Check the Example Dataset Cache | |
| run: | | |
| pip install datasets | |
| python ./.github/scripts/get_example_dataset.py | |
| test: | |
| needs: [get_dataset] | |
| name: Test | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| secrets: inherit | |
| uses: ./.github/workflows/test.yml | |
| build: | |
| name: Build | |
| permissions: | |
| contents: read | |
| pull-requests: write | |
| secrets: inherit | |
| uses: ./.github/workflows/build.yml | |
| upload_coverage: | |
| needs: [test] | |
| name: Upload Coverage | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout ${{github.repository }} | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Download Coverage Artifact | |
| uses: actions/download-artifact@v3 | |
| # if `name` is not specified, all artifacts are downloaded. | |
| - name: Upload Coverage to Coveralls | |
| uses: coverallsapp/github-action@v2 | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} |