Optional normalization for generic_cell_clustering.ipynb #1027
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alex-l-kong
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Jul 25, 2023
alex-l-kong
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srivarra
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alex-l-kong
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cliu72
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cliu72
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cliu72
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JLrumberger
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What is the purpose of this PR?
Closes #1000. Make the 99.9 percentile normalization in cell clustering optional.
How did you implement your changes
Adds a
normalizeflag totrain_cell_SOMand in the CellSOMCluster class which is defaulted to True.Changing this arg to False will not conduct 99.9 percentile normalization on the data before cell clustering.
Remaining issues
N/A