bump to kseq 0.5.3

.gitignore

@@ -3,4 +3,4 @@ hyperfine*
 .Rhistory
 rplot.R
 .DS_store
-fofn
+

Cargo.toml

@@ -6,7 +6,7 @@ edition = "2021"
 # See more keys and their definitions at https://doc.rust-lang.org/cargo/reference/manifest.html
 
 [dependencies]
-kseq = "0.5.2"
+kseq = "0.5.3"
 clap = "3.2.25"
 prettytable-rs = "^0.10"
 indicatif = "0.17.8"

tests/cli.rs

@@ -30,7 +30,7 @@ fn find_content_in_len() -> Result<(), Box<dyn std::error::Error>> {
 }
 
 #[test]
-fn multiple_input() -> Result<(), Box<dyn std::error::Error>> {
+fn test_multifile_input() -> Result<(), Box<dyn std::error::Error>> {
     let mut cmd = Command::cargo_bin("faster2")?;
     cmd.arg("-ts").arg("tests/test.fastq").arg("tests/test2.fastq.gz");
 
@@ -40,3 +40,15 @@ fn multiple_input() -> Result<(), Box<dyn std::error::Error>> {
 
     Ok(())
 }
+
+#[test]
+fn test_fofn_input() -> Result<(), Box<dyn std::error::Error>> {
+    let mut cmd = Command::cargo_bin("faster2")?;
+    cmd.arg("-ts").arg("tests/fofn");
+
+    cmd.assert()
+        .success()
+        .stdout(predicate::str::contains("30\t34627\t0\t165"));
+
+    Ok(())
+}

tests/fofn

@@ -0,0 +1,2 @@
+test.fastq
+test2.fastq.gz