Skip to content
View anuradhawick's full-sized avatar
:octocat:
Hello there :)
:octocat:
Hello there :)

Organizations

@DVios @pocketdrive @metagentools

Block or report anuradhawick

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
anuradhawick/README.md

G'day! Welcome to my GitHub home πŸ‘‹

I’m Anuradhaβ€”I’m and Solutions Architect for Bioinformatics Products at CSIRO, Australia. I got my Ph.D. in computer science from the School of Computing at the Australian National University in Canberra, Australia. I enjoy writing code, playing games and IoT DIYs.

Check out my personal website anuradhawick.com.

Check my recent web-site development at Vinyl.LK. This is implemented in AWS with Lambda, S3, Cloudfront and Route53! Check repo in Github

  • πŸ”­ I build bioinformatics software/tools, browse through my repos
  • πŸ”­ I've worked on clustering TGS sequencing data (binning long reads)
  • 🌱 Interested areas include Machine Learning, Bioinformatics and Computational Biology
  • πŸ“« How to reach me: [email protected]
  • 🏠 Check out my portfolio website: https://anuradhawick.com
  • πŸ“ Check out my Medium Blog: https://medium.com/@anuradhawick

My Apps my website

πŸ’» TypeFaster

A platform to practice your typiing. Find the repo - https://github.com/anuradhawick/typefaster .You can access the demo on https://typefaster.anuradhawick.com

πŸ“Ž Clipper

A versatile clipboard management and note-taking application designed specifically for developers.

AI/ML/Bioinformatics Researcher tools

I feel quite thrilled about few of my recent work! So decided to showcase here. 😎

🧬 Kmertools

kmertools is a k-mer based feature extraction tool designed to support metagenomics and other bioinformatics analytics.

🧬 RsBio-Seq

A faster FASTA/FASTQ reader with very small footprint in your code compared to Biopython.

First long read binner that uses both coverage and composition both in metagenomics binning. Here we introduce a neat trick to estimate read coverage via kmers and build a feature vector for coverage.

This enables generation of training images for YOLO given a set of objects and backgrounds. Makes life a lot easier as manually annotating real images is labour intensive.

This came as a requirement in Vinyl.LK. This is a solid template for any AWS lambda based project. All the yaml files and templates are included with sufficient(I hope) help and documentation.

πŸ‘¨πŸ½β€πŸ’» Algorithm Competitions

Here you will find how I have done some of the challenging code events in the past few years. I will try to migrate the things I have done before my time in GitHub as we go along.

Pinned Loading

  1. kmertools kmertools Public

    kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

    Rust 29 2

  2. algo-competitions algo-competitions Public

    Place to have all the algo stuff I do

    Python 1

  3. GPU-Optimized-Biological-Data-Analysis GPU-Optimized-Biological-Data-Analysis Public

    Java 1 1

  4. pocketdrive/pocketdrive-server pocketdrive/pocketdrive-server Public

    JavaScript

  5. vinyl-search vinyl-search Public

    All about Sri Lankan vintage and modern music records

    CSS 1

  6. aehrc/terraform-aws-serverless-beacon aehrc/terraform-aws-serverless-beacon Public

    Serverless implementation of Beacon V2 protocol, to enable cheaper and faster exchange of genomic and phenotypic information

    Python 9 5