Create info files #1
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| name: Create info files | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| base: | |
| - {directory: 'anvil-rstudio-bioconductor', image: 'us.gcr.io/broad-dsp-gcr-public/anvil-rstudio-bioconductor:3.19.0'} | |
| - {directory: 'anvil-rstudio-bioconductor-devel', image: 'us.gcr.io/broad-dsp-gcr-public/anvil-rstudio-bioconductor-devel:3.20.0'} | |
| name: Build branch images | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Free root space | |
| uses: almahmoud/free-root-space@v1 | |
| with: | |
| verbose: true | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Generate info JSON with Broad script | |
| if: steps.changed.outputs.CHANGED == 'TRUE' | |
| run: | | |
| mkdir -p ${{ matrix.base.directory }}/info | |
| mkdir -p /tmp/${{ matrix.base.directory }} | |
| CURR_VERSION=$(cat ${{matrix.base.directory}}/VERSION) | |
| docker run --name ${{ matrix.base.directory }} -d us.gcr.io/broad-dsp-gcr-public/${{ matrix.base.directory }}:${CURR_VERSION} | |
| sed -i "s/##${{matrix.base.directory}}-VERSION##/${CURR_VERSION}/g" config/conf.json | |
| bash scripts/generate_packages.sh ${{ matrix.base.directory }} | |
| # Remove spaces | |
| (cd ${{ matrix.base.directory }}/info && for file in *; do [[ "$file" == *" "* ]] && mv "$file" "${file// /}"; done) | |
| cp -r ${{ matrix.base.directory }}/info /tmp/${{ matrix.base.directory }}/ | |
| - name: Push info | |
| if: steps.changed.outputs.CHANGED == 'TRUE' | |
| uses: nick-fields/retry@v2 | |
| with: | |
| timeout_minutes: 10 | |
| max_attempts: 50 | |
| shell: bash | |
| command: | | |
| set -x | |
| git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| git pull origin ${GITHUB_REF#refs/heads/} || git reset --hard origin/${GITHUB_REF#refs/heads/} | |
| git config user.name github-actions | |
| git config user.email [email protected] | |
| cp -r /tmp/${{ matrix.base.directory }}/info ${{ matrix.base.directory }}/ | |
| git add ${{ matrix.base.directory }} | |
| git commit -m "Generated info for ${{ matrix.base.directory }}" | |
| git push |