Add continue on error #100
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build container image for GHCR | |
| on: | |
| push: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| base: | |
| - {directory: 'anvil-rstudio-bioconductor'} | |
| - {directory: 'anvil-rstudio-bioconductor-devel'} | |
| name: Build branch images | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Free root space | |
| uses: almahmoud/free-root-space@v1 | |
| with: | |
| verbose: true | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Login to GHCR | |
| uses: docker/login-action@v2 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.actor }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Set version | |
| id: version-meta | |
| run: | | |
| devversion="$(cat ${{ matrix.base.directory }}/dev_VERSION)" | |
| version="$(cat ${{ matrix.base.directory }}/VERSION)" | |
| if [ "$devversion" != "${devversion%"$version"*}" ]; then | |
| devversion="$(echo $version)" | |
| fi | |
| echo "CONTAINER_VERSION=$devversion" >> $GITHUB_OUTPUT | |
| - name: Get list of changed files if on push (check if VERSION changed) | |
| id: changed | |
| if: github.event_name == 'push' | |
| run: | | |
| git diff --name-only ${{ github.event.before }} ${{ github.event.after }} > tmpchanged | |
| if grep -xq "^${{ matrix.base.directory }}/VERSION$" tmpchanged; then | |
| echo "CHANGED=TRUE" >> $GITHUB_OUTPUT | |
| else | |
| echo "CHANGED=FALSE" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Extract metadata for container image | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ghcr.io/${{ github.repository_owner }}/${{ matrix.base.directory }} | |
| tags: | | |
| type=raw,value=${{ steps.version-meta.outputs.CONTAINER_VERSION }} | |
| - name: Build and push container image to GHCR | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: ${{ matrix.base.directory }} | |
| file: ${{ matrix.base.directory }}/Dockerfile | |
| push: true | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| - name: Generate info JSON with Broad script | |
| if: steps.changed.outputs.CHANGED == 'TRUE' | |
| run: | | |
| mkdir -p ${{ matrix.base.directory }}/info | |
| mkdir -p /tmp/${{ matrix.base.directory }} | |
| docker run --name ${{ matrix.base.directory }} -d ${{ steps.meta.outputs.tags }} | |
| sed -i "s/##${{matrix.base.directory}}-VERSION##/$(cat ${{matrix.base.directory}}/VERSION)/g" config/conf.json | |
| bash scripts/generate_packages.sh ${{ matrix.base.directory }} | |
| # Remove spaces | |
| (cd ${{ matrix.base.directory }}/info && for file in *; do [[ "$file" == *" "* ]] && mv "$file" "${file// /}"; done) | |
| cp -r ${{ matrix.base.directory }}/info /tmp/${{ matrix.base.directory }}/ | |
| - name: Push info | |
| if: steps.changed.outputs.CHANGED == 'TRUE' | |
| uses: nick-fields/retry@v2 | |
| with: | |
| timeout_minutes: 10 | |
| max_attempts: 50 | |
| shell: bash | |
| command: | | |
| set -x | |
| git config --global --add safe.directory "$GITHUB_WORKSPACE" | |
| git pull origin ${GITHUB_REF#refs/heads/} || git reset --hard origin/${GITHUB_REF#refs/heads/} | |
| git config user.name github-actions | |
| git config user.email [email protected] | |
| cp -r /tmp/${{ matrix.base.directory }}/info ${{ matrix.base.directory }}/ | |
| git add ${{ matrix.base.directory }} | |
| git commit -m "Generated info for ${{ matrix.base.directory }}" | |
| git push |