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Add 3.19 to README and CHANGELOG #102

Add 3.19 to README and CHANGELOG

Add 3.19 to README and CHANGELOG #102

Workflow file for this run

name: Build container image for GHCR
on:
push:
branches:
- main
workflow_dispatch:
jobs:
build:
strategy:
fail-fast: false
matrix:
base:
- {directory: 'anvil-rstudio-bioconductor'}
- {directory: 'anvil-rstudio-bioconductor-devel'}
name: Build branch images
runs-on: ubuntu-latest
steps:
- name: Free root space
uses: almahmoud/free-root-space@v1
with:
verbose: true
- uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Login to GHCR
uses: docker/login-action@v2
with:
registry: ghcr.io
username: ${{ github.actor }}
password: ${{ secrets.GITHUB_TOKEN }}
- uses: actions/setup-python@v4
with:
python-version: '3.10'
- name: Set version
id: version-meta
run: |
devversion="$(cat ${{ matrix.base.directory }}/dev_VERSION)"
version="$(cat ${{ matrix.base.directory }}/VERSION)"
if [ "$devversion" != "${devversion%"$version"*}" ]; then
devversion="$(echo $version)"
fi
echo "CONTAINER_VERSION=$devversion" >> $GITHUB_OUTPUT
- name: Get list of changed files if on push (check if VERSION changed)
id: changed
if: github.event_name == 'push'
run: |
git diff --name-only ${{ github.event.before }} ${{ github.event.after }} > tmpchanged
if grep -xq "^${{ matrix.base.directory }}/VERSION$" tmpchanged; then
echo "CHANGED=TRUE" >> $GITHUB_OUTPUT
else
echo "CHANGED=FALSE" >> $GITHUB_OUTPUT
fi
- name: Extract metadata for container image
id: meta
uses: docker/metadata-action@v4
with:
images: ghcr.io/${{ github.repository_owner }}/${{ matrix.base.directory }}
tags: |
type=raw,value=${{ steps.version-meta.outputs.CONTAINER_VERSION }}
- name: Build and push container image to GHCR
uses: docker/build-push-action@v3
with:
context: ${{ matrix.base.directory }}
file: ${{ matrix.base.directory }}/Dockerfile
push: true
tags: ${{ steps.meta.outputs.tags }}
labels: ${{ steps.meta.outputs.labels }}
- name: Generate info JSON with Broad script
if: steps.changed.outputs.CHANGED == 'TRUE'
run: |
mkdir -p ${{ matrix.base.directory }}/info
mkdir -p /tmp/${{ matrix.base.directory }}
docker run --name ${{ matrix.base.directory }} -d ${{ steps.meta.outputs.tags }}
sed -i "s/##${{matrix.base.directory}}-VERSION##/$(cat ${{matrix.base.directory}}/VERSION)/g" config/conf.json
bash scripts/generate_packages.sh ${{ matrix.base.directory }}
# Remove spaces
(cd ${{ matrix.base.directory }}/info && for file in *; do [[ "$file" == *" "* ]] && mv "$file" "${file// /}"; done)
cp -r ${{ matrix.base.directory }}/info /tmp/${{ matrix.base.directory }}/
- name: Push info
if: steps.changed.outputs.CHANGED == 'TRUE'
uses: nick-fields/retry@v2
with:
timeout_minutes: 10
max_attempts: 50
shell: bash
command: |
set -x
git config --global --add safe.directory "$GITHUB_WORKSPACE"
git pull origin ${GITHUB_REF#refs/heads/} || git reset --hard origin/${GITHUB_REF#refs/heads/}
git config user.name github-actions
git config user.email [email protected]
cp -r /tmp/${{ matrix.base.directory }}/info ${{ matrix.base.directory }}/
git add ${{ matrix.base.directory }}
git commit -m "Generated info for ${{ matrix.base.directory }}"
git push